Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0817 ATGGTTATGGGGAGAACACTGTTCATCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGGTGGGAAGGAAAGAACCTTTTTATTCACCTACCACTGTGAATTCCACTGTTTCTTCTAGACCGAAGGTTGTGAAGTTTGGTGCCCTCTTTAATATGGATTCTGTCATTGGAAGATCAGCGTTACCTGCAATTATGGCTGCTGTTAAGGATGTTAATTCTAGCACCAGCATTCTCCCTGGCATTGATCTGCAAGTTATTTTACATGATACCAATTGCAGTGCTTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCAGTGTCATCTGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTATCGTTTGGGGCAACTGACCCCACTCTATCTGCTCTACAATACCCATATTTTGTCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAATTGCAGACTTTGTTGATTACTACAGATGGAAGAAGGTGATTGCCATCTATGTAGATGATGACAATGGGAGGAATGGAGTTTCTGTATTGGGCGATGCAATGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGAAGCCAAAGAAAGTGACATCAGTGACTTGTTAAATGAAGTGAACTTAATGGAATCGCGGGTCTATGTTCTACACGTGAATCCTGATCATGGTTTAGCAATTTTCTCCATTGCCAAGAGGCTAAGAATGATGGACAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTAGATTCACCTGATACTGACACAATGGATCTCTTGCAAGGTGTTGTGGCGTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAGTTTTCTCTCCAGGTTGAAAAGCCAAAGAGACAATGAGACTGTGAGCTTCAATTCTTATGCACTTTATGCATATGATTCTGTTTGGTTAGCAGCTCGCGCCCTCGATGCTTATCTCAATGAAGGTGGAAATGTATCTTTCTCCAGTGACCCTAAGTTGCGTGACACAAATGGAAGCATGCTGCAGTTAGCATCGCTTCGTACCTTTGATGGTGGTCCACAGTTTCTCAAGACAATTTTGGGAATGAACTTCACTGGTTTGAGTGGTCAAGTTGAGTTTGACATGGACAAGAATTTAGTTCATCCAGCCTATGATATTTTAAATATCGGTGGTAGTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCCGGTCTATCAGTTATAGCTCCTGAAGTTTTATATGAGAAAAAATCATCTAAGACTTCTTTAAAGAGCAATCAAGAGCTGTACAGTGTGATATGGCCAGGAGAGGCCACAACTACACCAAGGGGATGGGTGTTTCCCAACAATGGACAGCCACTCAGGATAGCAGTGCCGAACCGAGTGAGCTACACGGATTTTGTTTCTAAAAGCAAGAACCCTCCAGGGGTACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAAATTGTTGAATTATCCTGTCCCGAGACAATATATATTATTTGGAAATGGTGAAAGGAATCCTAGCTACAACGAGCTTGTGGAGCAAGTTGCACAGAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTTACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTGTGGAGGAGAAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCGTTCACTGCTCAAATGTGGTTGGTCACTGGTGCTTTCTTTCTTTTCGTTGGGACTGCTGTGTGGATTCTTGAGCACCGGCACAATCCTGAGTTTCGTGGTTCTCCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGGCGATTGGTGCTAATAATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGCAACTGTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTCAACCAATTGGAATTCAAGACGGGTCATTTGCACGCAAGTATCTGATAGATGACCTTAATATAGCTGAATCTAGGATAGTTACATTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGTGGTCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGAGGTCTTGATGTCCAGGACTGACTGTAAGTTCACAACTGTTGGGCAGGAGTTCACTAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTTGATTTGTCAACTGCCATCCTTCAACTCTCTGAGAGTGGGGACCTGCAAAGGATTCATGACAAATGGCTTAATAAAAAGGAGTGTGCAACCGTTGATGCTAATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCTTGTGTCATTGCCCTGATTATTTTTTTTGCTAGAATCTTCTGTCAATACAACAAATTCAGCCCCGAGCCTGAGAAGACCGACAAGGAAATGCAACCAGTCAGGTCTAGACGTCCTAGCAGAACTCGTAGCCTCAAGAAGTTGATGGTATTTGTAGATAGAAGAGAAGCAGATATCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCATTGGATAA 2778 0.4255 MVMGRTLFILVLCLWIPLEVVGRKEPFYSPTTVNSTVSSRPKVVKFGALFNMDSVIGRSALPAIMAAVKDVNSSTSILPGIDLQVILHDTNCSAFLGTMEALQLMENDVVAVVGPVSSGIAHVISHVVNELHVPLLSFGATDPTLSALQYPYFVRTTQNDYFQMYAIADFVDYYRWKKVIAIYVDDDNGRNGVSVLGDAMSKKRAKISYKAAFPPEAKESDISDLLNEVNLMESRVYVLHVNPDHGLAIFSIAKRLRMMDSGYVWIATDWLPSVLDSLDSPDTDTMDLLQGVVAFRHHIPDTDLKKSFLSRLKSQRDNETVSFNSYALYAYDSVWLAARALDAYLNEGGNVSFSSDPKLRDTNGSMLQLASLRTFDGGPQFLKTILGMNFTGLSGQVEFDMDKNLVHPAYDILNIGGSGSRRIGYWSNHSGLSVIAPEVLYEKKSSKTSLKSNQELYSVIWPGEATTTPRGWVFPNNGQPLRIAVPNRVSYTDFVSKSKNPPGVQGYCIDVFEAALKLLNYPVPRQYILFGNGERNPSYNELVEQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPVEEKKSSPWSFLEPFTAQMWLVTGAFFLFVGTAVWILEHRHNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLIDDLNIAESRIVTLKNMEDYIDALQRGPKAGGVVAVVDELPYIEVLMSRTDCKFTTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECATVDANSNKLALTSFWGLFLICGIACVIALIIFFARIFCQYNKFSPEPEKTDKEMQPVRSRRPSRTRSLKKLMVFVDRREADIKEILRENKKRRHSIG* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0817 925 Pfam Ligand-gated ion channel 824 853 IPR001320 GO:0015276|GO:0016020
Gso12g0817 925 SUPERFAMILY Periplasmic binding protein-like II 457 824 - -
Gso12g0817 925 Gene3D - 592 712 - -
Gso12g0817 925 SUPERFAMILY Periplasmic binding protein-like I 39 473 IPR028082 -
Gso12g0817 925 PIRSF IGluLR_plant 1 924 IPR017103 -
Gso12g0817 925 CDD PBP1_GABAb_receptor_plant 45 434 IPR044440 -
Gso12g0817 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Gso12g0817 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Gso12g0817 925 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 330 342 - -
Gso12g0817 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 913 - -
Gso12g0817 925 Gene3D - 159 432 - -
Gso12g0817 925 PANTHER GLUTAMATE RECEPTOR 3.4 33 913 - -
Gso12g0817 925 SMART GluR_14 482 824 IPR001320 GO:0015276|GO:0016020
Gso12g0817 925 Pfam Receptor family ligand binding region 61 416 IPR001828 -
Gso12g0817 925 Pfam Bacterial extracellular solute-binding proteins, family 3 503 823 IPR001638 -
Gso12g0817 925 Gene3D - 476 591 - -
Gso12g0817 925 Gene3D - 63 407 - -
Gso12g0817 925 Gene3D - 713 826 - -
Gso12g0817 925 CDD GluR_Plant 479 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0817 Gso-Chr12 8678900 8685041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0817 40 789 Ion Channels AT1G05200 68.133 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0817 K05387 - gmx:100802782 1820.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0817 12 8678900 8685041 Gso6g2507 6 46795030 46801322 GST
Gso12g1640 12 39990305 39996465 Gso12g0817 12 8678900 8685041 PCT
Gso11g3227 11 48014870 48020870 Gso12g0817 12 8678900 8685041 PCT
Gso12g0817 12 8678900 8685041 Gso12g1639 12 39977902 39983836 PCT
Gso12g0817 12 8678900 8685041 Gso11g3228 11 48025864 48031659 PCT