Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0798 ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTCTCCACCGCCACGTGCTGCGGTGGTGTCTTCGCTGTCAAGTCATCGGAGCTGCCACAATCAGAGCCTCTAAAAAAGGAGCAGAAAATTTTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACGCTTGCTCAGGCGACTCGCCGGTGCGATGGTCGGCTCCAGGAGCCGGCCATTGCATGCTACACAAGGCAAATCGTGCAGGGGCTGGAGTACCTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAAATGGGGCCAAAATTGGTGACTTGGGGTGTGCCAAGAGTGCGGCGGATTCCACGGGGGCGATCGGCGGCACACCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGTACTGTGATTGAAATGGTAACCGGTGGTGCACCATGGCCTAATGTGGAAGACCCTTTTTCAGTGCTTTATCACATTGCATATTCTAGTGAAGTGCCCGAGATTCCTTGTTTTCTATCCAAAGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAATTGTGTTTCAATAAGGAGGTTTTGGAGTCTAATTCAAGTTCCCCAACAAGTGTTCTTGAGCAAGGCTATTGGAGTTGTCTGGAAGAGTCAGAGAGTTTAGGCGATTTGATTCACAAAACAAGAAAGTTTGAAACTTTGGCTGCCGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTGCCCTATTGGGCAAGACATGATGATGAGAATTGGATCACAGCAAGAGGGAATGGGGTTGAAGGTTTTGCCAATTGTGGGGCAGAGACAGCTTCTTTTGCCAGTCATGGGTTGTCTCACTAG 1059 0.4995 MEWHRGHTIGQGSSATVSTATCCGGVFAVKSSELPQSEPLKKEQKILSSLSSPYVVAYKGCDITMENNKLLFNLFMEYMPFGTLAQATRRCDGRLQEPAIACYTRQIVQGLEYLHSKGLVHCDIKGANILIGENGAKIGDLGCAKSAADSTGAIGGTPMFMAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVEDPFSVLYHIAYSSEVPEIPCFLSKEAKDFLGKCLRRNPQERWKASELLKHPFIEKLCFNKEVLESNSSSPTSVLEQGYWSCLEESESLGDLIHKTRKFETLAAGRVRMLALSSGVPYWARHDDENWITARGNGVEGFANCGAETASFASHGLSH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0798 352 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0798 352 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0798 352 PANTHER MAP KINASE KINASE KINASE 1 334 - -
Gso12g0798 352 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Gso12g0798 352 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 334 - -
Gso12g0798 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gso12g0798 352 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Gso12g0798 352 CDD STKc_MAPKKK 2 251 - -
Gso12g0798 352 SUPERFAMILY Protein kinase-like (PK-like) 3 275 IPR011009 -
Gso12g0798 352 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0798 Gso-Chr12 8350882 8352223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0798 1 330 MAP Kinase Kinase Kinase AT1G05100 49.718 1.01e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso12g0798 Pkinase 9.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0798 K20716 - gmx:100819665 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0798 12 8350882 8352223 Gso12g0798 12 8350882 8352223 ECH
Gso12g0798 12 8350882 8352223 Gso6g2527 6 47001104 47002444 GST
Gso12g1625 12 39818115 39819421 Gso12g0798 12 8350882 8352223 PCT
Gso11g3238 11 48158073 48159315 Gso12g0798 12 8350882 8352223 PCT
Gso12g0798 12 8350882 8352223 Gso12g1625 12 39818115 39819421 PCT
Gso12g0798 12 8350882 8352223 Gso11g3238 11 48158073 48159315 PCT