Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0796 ATGATTAGACGTGGTGGGCTATCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCATAAGCCAATTGTTCTCAACTCTTTCTCAGCTGAAGACACAAACAGCCACAACCCCGAGTGGAAAAAACTCAGTCTTCACAACAACAACAACATGGATGCCACAGTTACCACAAAAGACTACACCATCCCCTTCCGAATCAACCTTAGCTGTTCTTCTGCAGACAATCATGATGATGCTTCTTCACCAACATCTCTCCATAGCAGAACCGAGATGGACTTCTTCTCCGACAAGAACAGTACCAAAGATGATGACAACAACATCGTTGCTGCGGCTGGTTCTGCCTCTCTCCCCGACAATGATCATCATTCCATCTCTCCACCCACGTTGGATTTAAAAGTAAACACTTGTCTGAATCTTCTTACTACCAATGCTAGTAGCGATCAATCTATGGTGGAAGATGAGATATCACCCAATTCAGAAGACAAAGAAACTAAGAAAGAGATGGCTGATCTTCAAGGTGATCTTGAGAGAATGAAAAGGGAGAATCAAAAGTTGAGGGACACGCTTGATGAGGTTAACACCAACTACAACGCGCTTCAGATGCACTTTATGAATATGATGCAGGAGCGGAAGGGCGAGGAAGGTGAAGATCAGCAAGAAGTGTCTGATGGCAAGGTTAAAGAGAAGAAGCAGGGTCAGAGTGGTGGTGGGGTATTGGTGTCAAGGCAGTTTATGGATCTTGGGTTGGCTAGCGCTGATATTGAACCCTCATCTTCATCAGGGGGAATAAGAAGTCAAGATAGATCAGGATCACCCAACATAGATGTGGCTTCCAAGGGATTAGGGACTAGTAACAATGATGGGAATAATAGTGTTAATGATGAAGAAGAGAAGGAGTATGATAGAGGGATTGAGAGCGAAGATAGTCCTTCAGGGCATGCTGATAAAGTTCCAAGGTTCAGTAGTCCTTCAAAGAATAATAATGTTGATCAGGCTCAGGCTGAGGCTACTATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCCGAAGCACCCATGATTACTGATGGGTGTCAATGGAGAAAGTACGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGATGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACCGAACAGTCCTTATCACAACCTATGAAGGAAATCACAACCATCCTTTGCCTCCAACAGCAATGGCAATGGCACAAACCACATCCTCAGCAGCAAGAATGTTGCTTTCTGGATCCATGTCAAGTGCTGACAGCATAATGAATGCAGACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCAAGCATGGCCACTATCTCAGCTTCTGCTCCATTCCCAACAGTTACATTAGACCTAACTCATTCTCCAAACCCTCTACAGTTCCCAAGGCAGCAGCATCCAAACCAGTTGCAAATTGGTGTCCCTCAGAATTTTGCAAACTCCCCATCATCTTTAATGCCTCAGATATTCGGACAAGCACTTTACAACCAATCAAAGTTTTCTGGCCTACAAATGTCATCACATGATACAGCAGACCCTTCTTCACAATTTGGTTACCAACCTCATCAGGTTCCACCACACCTTGCTGACACAGTTGGTGCTGCCATTGCTACTGATCCCAATTTCACTTCAGCATTGGCAGCTGCTATCACTTCCATCATTGGTGGTGCTCAGCAACAACACAGCAACATTAATAATAATAGTAACAATAATGTCAACATGACAGCCAACATCAACAATGGCAATGGCAACAGCAATGGCAACGGAAAGCAATAA 1848 0.4453 MIRRGGLSMDSDPIGSFFLHKPIVLNSFSAEDTNSHNPEWKKLSLHNNNNMDATVTTKDYTIPFRINLSCSSADNHDDASSPTSLHSRTEMDFFSDKNSTKDDDNNIVAAAGSASLPDNDHHSISPPTLDLKVNTCLNLLTTNASSDQSMVEDEISPNSEDKETKKEMADLQGDLERMKRENQKLRDTLDEVNTNYNALQMHFMNMMQERKGEEGEDQQEVSDGKVKEKKQGQSGGGVLVSRQFMDLGLASADIEPSSSSGGIRSQDRSGSPNIDVASKGLGTSNNDGNNSVNDEEEKEYDRGIESEDSPSGHADKVPRFSSPSKNNNVDQAQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPTAMAMAQTTSSAARMLLSGSMSSADSIMNADFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPRQQHPNQLQIGVPQNFANSPSSLMPQIFGQALYNQSKFSGLQMSSHDTADPSSQFGYQPHQVPPHLADTVGAAIATDPNFTSALAAAITSIIGGAQQQHSNINNNSNNNVNMTANINNGNGNSNGNGKQ* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0796 615 Pfam WRKY DNA -binding domain 356 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g0796 615 MobiDBLite consensus disorder prediction 210 239 - -
Gso12g0796 615 ProSiteProfiles WRKY domain profile. 349 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g0796 615 SUPERFAMILY WRKY DNA-binding domain 347 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g0796 615 PANTHER OS05G0567200 PROTEIN 60 605 - -
Gso12g0796 615 Coils Coil 161 202 - -
Gso12g0796 615 MobiDBLite consensus disorder prediction 253 290 - -
Gso12g0796 615 SMART WRKY_cls 354 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso12g0796 615 MobiDBLite consensus disorder prediction 146 167 - -
Gso12g0796 615 MobiDBLite consensus disorder prediction 210 230 - -
Gso12g0796 615 MobiDBLite consensus disorder prediction 252 330 - -
Gso12g0796 615 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 605 IPR044810 GO:0003700
Gso12g0796 615 Gene3D WRKY domain 339 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso12g0796 615 MobiDBLite consensus disorder prediction 291 314 - -
Gso12g0796 615 MobiDBLite consensus disorder prediction 588 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0796 Gso-Chr12 8313142 8316672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0796 90 593 WRKY Transcription Factor Family AT1G62300 48.842 2.36e-126 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso12g0796 WRKY 4.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0796 - - gmx:100797998 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0796 12 8313142 8316672 Gso12g0796 12 8313142 8316672 ECH
Gso12g0796 12 8313142 8316672 Gso15g0925 15 8623499 8626084 ECH
Gso12g0796 12 8313142 8316672 Gso6g2528 6 47012966 47016470 GST
Gso11g3239 11 48177242 48180155 Gso12g0796 12 8313142 8316672 PCT
Gso12g0796 12 8313142 8316672 Gso11g3239 11 48177242 48180155 PCT