Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0788 ATGTTCAACGGTATGATGGATCCCGATTTGATGAAGATCGCTCAGGAGCAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTGCTGAAGACTTTAAACTTGCTGCAGAGCAATTAAAGCATACCCGTCCGGAAGAAATGGCCGAGATTGGTGAGAAGGTGGCTAATGCGAGTCCTGAGGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCATAATCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGGTACCATCTTTCCAGAGTAGAAAGCTTCTTTTGGCATGCTCTCTGAACTTGATGTCCTGTTACTTGAAGACAAGCCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCGTTATCGAAGAGGTCAAGCTTATAAGGAACTGGGTCTACTAAAAGATGCTGTTTCTGATCTGAGCATGGCACTTGAAGTGTCCCCTGATGATGATACAATTACAGAGCTTTTACGGGATACCAAGGAAAAATTGGCAATGGAAGGTGGTGAGCATGCACCTAGAAGAATAGTAACTGAAGAAATAACTGAAGTTGAGGATGTTCCTTCTGGAAGCTCTTTGAAACAATCGGTGGTTCAACTAAAAAAATCTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACCTCTGATATGGTTAGTAAAATGTCACCTGAGGAACTTCAAAGAATGCTTGACATGGCTTCTTCATTTCAAGGGGATAATCCAATTTTTAGAGGAGGTTCCCCTGATTCTTCTTTCAACCCTGGATCAATGCCTCCAAACGTGACACCTGATATGTTTAAAGCAGCAAGTGATATGATTAGTAAAATGCCAGCAGATGACCTTAAGAGGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTACTCCATTAGCAGCAGCAGTAGATGAGAATGAAAGAAATGTTTCCCGGTCAAACTTACCATCATCAAGTACTAATGGAACTACTGCTTTTGGAGAATCTAGTTCTCATAATGTGTTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTGCCAATCTCCAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGAAGATGTTCACATCCATGGTTAAAAATATGAGCCCGGAAATGATGGCTAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1749 0.4208 MFNGMMDPDLMKIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKVANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYNDALKKYMLAKENIKEVPSFQSRKLLLACSLNLMSCYLKTSQYNECIKEGSEVLAYDAKNLKARYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTITELLRDTKEKLAMEGGEHAPRRIVTEEITEVEDVPSGSSLKQSVVQLKKSGDSSKSYSTANNGIPKTKTDSLDALKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDMASSFQGDNPIFRGGSPDSSFNPGSMPPNVTPDMFKAASDMISKMPADDLKRMFEMASSLKGKESTPLAAAVDENERNVSRSNLPSSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSSANLQEQMRNQMKDPAMRKMFTSMVKNMSPEMMANMGEQFGVKLSPEEAAKAQQAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAILMLILAVILHRLGFIGG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0788 582 MobiDBLite consensus disorder prediction 266 284 - -
Gso12g0788 582 MobiDBLite consensus disorder prediction 411 450 - -
Gso12g0788 582 MobiDBLite consensus disorder prediction 425 450 - -
Gso12g0788 582 SMART tpr_5 180 213 IPR019734 GO:0005515
Gso12g0788 582 SMART tpr_5 103 136 IPR019734 GO:0005515
Gso12g0788 582 SMART tpr_5 146 179 IPR019734 GO:0005515
Gso12g0788 582 MobiDBLite consensus disorder prediction 266 287 - -
Gso12g0788 582 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Gso12g0788 582 Gene3D Tetratricopeptide repeat domain 89 234 IPR011990 GO:0005515
Gso12g0788 582 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 58 581 - -
Gso12g0788 582 PANTHER OUTER ENVELOPE PROTEIN 61 58 581 - -
Gso12g0788 582 SUPERFAMILY TPR-like 96 226 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0788 Gso-Chr12 8215738 8220679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0788 93 227 Calmodulin-binding Proteins AT5G48570 34.752 4.28e-15 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0788 12 8215738 8220679 Gso6g2533 6 47063491 47068739 GST