Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0784 ATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGCAACAATGCCGCTTCCTCCAAGCCTTCCAATCAACCTAAGCCTTCTTCCGATAAACCCCATTCCGAGAAAACGGTGGCTGGAGGTCAGGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATTCTAACAAGCAAAAGGGGAAAGACAAGAAAGAAATGCAGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACAGTGAGGAAATACCGGAGCCAAAGAAAATTCATGAAGATGATGGAGATGACTCTGTGTTGCCCACTAATAAAAAGAAGTTAGCTGACACCACTCCAACAAAGAAGTTGAAGAGTGGATCAGGTAGGGGGCTTCCCCAGAAATCTGCAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCTGCTGCTAAATCTGCTGGAAGGGGTGATGGTGGAAGAGGAGCACCAGGGCGATCAACTAGTGGGAGAGGTAGAGGGGGTGGGAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGCGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAACAGCTAGGAACTTCCTTCCTCACAGAGGATGGTTTGTTTGATATGATTCGTGGCTCAAAACCTGCAAAAGCTCCTTCACAAGAAGACAAGAAACCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGTCCCTCTGTCTTCACGCTCACCTTCTAAGCAAGCCAAGCCAAAGACTGCTACTACTGTTCAGTCTTCTTTGATGTGGACTGAAAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGTAATTGGTTGAAAGCTTGGAATGAGCATTTTTTGGACACTGGTAACAAAAAGCAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACTCCTGGTATTGGAAAAACAACTTCTGCGACGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAACTTGTAACCAACGAGGCCATTGGTATTAATATGGGACGGTCAAAGCATTACAAATCTGTGCTCATTATGGATGAAGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAAGACTTCAAGTTAATGAGATTGCACTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGATGATATTAGGCAGCGCTTTCTTACCAATGCAAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATTATCCAGGAAAATTATATTAATTATAGACCAAGCATGGCTGGTAAGGATGACAGTGGCGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCTACAAGCATAATTCCTGCGTCATTGTTACACGGGCAGAGGGAAATACTTGAACAGGGAGAGCGAAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTAAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTCTTCTTAAACAAATGACAGAGACCCTGCGAACCCTGCCCAAGGCTGAAGCAGTTCAGCAAGTTGTGGAATTTATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATTGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCACATCTCGGGTTGTTCGAGTTGCAGATCTAATCACTCTTCCTGGAGTAAAGAAGGTCCCTAAGAAGCGTATTGCTGCTATTCTGGAACCAGCTGGCGAAGAAGTGGAAAAAGGTGAAGGTGATGCCTTGGACGAGAGCGAAGAGGAGAACAGCTCTGATACAGAAGAGTTGGAGGGCACCACCAAGGGCGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAGGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGAAATTCAAGTTCTAAGAAGACATCGGGTGGTAGAGGTAAAGGTGTTTCTGTATCTGGGAAGAAGGTTGCTCAAGCTCCAAAGACTACTGCAAAAAGAAAAAGGTGA 2850 0.4305 MSDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPHSEKTVAGGQESSGRRITSKYFNSNKQKGKDKKEMQELPAKRKNMKDSEEIPEPKKIHEDDGDDSVLPTNKKKLADTTPTKKLKSGSGRGLPQKSAVLEESDEDDDKDAVSAAKSAGRGDGGRGAPGRSTSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGSKPAKAPSQEDKKPVNKAVAVASQSKVSPKSQVKVPLSSRSPSKQAKPKTATTVQSSLMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSATLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGINMGRSKHYKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSMAGKDDSGVKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVATSIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKQMTETLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSTSRVVRVADLITLPGVKKVPKKRIAAILEPAGEEVEKGEGDALDESEEENSSDTEELEGTTKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKTSGGRGKGVSVSGKKVAQAPKTTAKRKR* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0784 949 MobiDBLite consensus disorder prediction 891 926 - -
Gso12g0784 949 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 921 - -
Gso12g0784 949 Gene3D BRCT domain 173 275 IPR036420 -
Gso12g0784 949 CDD HLD_clamp_RFC 522 580 - -
Gso12g0784 949 CDD BRCT_RFC1 196 274 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 14 30 - -
Gso12g0784 949 Gene3D - 522 592 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 274 329 - -
Gso12g0784 949 SMART AAA_5 385 523 IPR003593 -
Gso12g0784 949 MobiDBLite consensus disorder prediction 180 195 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 40 58 - -
Gso12g0784 949 CDD AAA 386 485 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 857 949 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 296 329 - -
Gso12g0784 949 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 921 - -
Gso12g0784 949 SUPERFAMILY post-AAA+ oligomerization domain-like 593 738 IPR008921 GO:0003677|GO:0006260
Gso12g0784 949 Gene3D - 333 521 IPR027417 -
Gso12g0784 949 SUPERFAMILY BRCT domain 196 275 IPR036420 -
Gso12g0784 949 Coils Coil 890 910 - -
Gso12g0784 949 SMART BRCT_7 198 276 IPR001357 -
Gso12g0784 949 MobiDBLite consensus disorder prediction 1 198 - -
Gso12g0784 949 PIRSF RFC1 1 924 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Gso12g0784 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 582 IPR027417 -
Gso12g0784 949 Pfam Replication factor RFC1 C terminal domain 662 824 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Gso12g0784 949 Pfam ATPase family associated with various cellular activities (AAA) 389 488 IPR003959 GO:0005524|GO:0016887
Gso12g0784 949 Gene3D - 594 703 - -
Gso12g0784 949 ProSiteProfiles BRCT domain profile. 196 274 IPR001357 -
Gso12g0784 949 MobiDBLite consensus disorder prediction 865 881 - -
Gso12g0784 949 MobiDBLite consensus disorder prediction 59 113 - -
Gso12g0784 949 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0784 Gso-Chr12 8149109 8158736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0784 1 907 Core DNA Replication Machinery Family AT5G22010 67.391 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0784 K10754 - gmx:100790070 1680.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0784 12 8149109 8158736 Gso6g2538 6 47100448 47110911 GST