Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0783 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAGCAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTAACGGATTCTACTGA 558 0.4409 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQHLSFQEPSSKELGSSSKCSKIAPFEAVEHELPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKNLKLDGNKQEKLDQGEGAEKSNGFY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0783 185 Pfam YABBY protein 7 159 IPR006780 GO:0007275
Gso12g0783 185 Gene3D High mobility group box domain 103 155 IPR036910 -
Gso12g0783 185 SUPERFAMILY HMG-box 104 152 IPR036910 -
Gso12g0783 185 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 185 - -
Gso12g0783 185 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0783 Gso-Chr12 8128685 8136161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0783 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 64.211 1.81e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso12g0783 YABBY 6.6e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0783 K25796 - gmx:100500091 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1606 12 39597271 39607331 Gso12g0783 12 8128685 8136161 PCT
Gso11g3248 11 48274487 48283635 Gso12g0783 12 8128685 8136161 PCT
Gso12g0783 12 8128685 8136161 Gso12g1606 12 39597271 39607331 PCT
Gso12g0783 12 8128685 8136161 Gso11g3248 11 48274487 48283635 PCT