Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0775 ATGGAAGAAGTTGAAATCCCACAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGCAGTGGTTGCTTAAGGCCAAAGATTGTGTGTGTCCTGTTTCCAAGCAACCATTGCCAAGAAGCTCTCAATACTTGACCCCTAATCACACACTTCGGAGGCTGATTCAAGCTTGGTGTTCAGCAAACACGGCCAATGGTGTTGATCGAATTCCGACCCCGAAAACGCCTTTGAGCATGATCCAAGTTCAGAAGCTTGTGAAGGGTCTTGAGGCTCCTTGTTCTTATCAAACATCGTTGGAGAAGTTGCATGCCTTGGCTACAATTGAGAGGAACAGAACTTGCATGGCTGAGGCTAGTGTGGCTAAGGCCATGATCAAATTGATTAACAAGAGTTTCAAAGAAGGAAACACAAACACCACCTGCATAGAAAAGGCTTTGAGAATTGTTCATGTTCTTTGGAGCAATGATCAATATAGCATGAAGACTCTAGTTGGGGAGGACTTAGACTTCATCAACTCTTTGACTTGGATTGTGAGGCTTCATTTGGATGAAAACAACATCAAGATGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATTGAAGTTGTTGATTCAACCCTTTTGGGGAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGTTTTGAGAAAGAAAAGACTCTCTCAACAAGCCATTAAATATGCTTTGTGGGTGCTTACAGAAACTAGCACTTTGGGTAGAAACAGAACAAGGATTGTTGAAGCAGGTGCAGTCACAGAACTCATAGAGCTTGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAATCTTCTGGCACTCCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGCGACACGCTGCCGGCATTGCAGTGCTTTCTAAGAGGGTTTTCAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCCAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCCTGCATACAAAATGTGTTATAA 1215 0.4247 MEEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEQWLLKAKDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSANTANGVDRIPTPKTPLSMIQVQKLVKGLEAPCSYQTSLEKLHALATIERNRTCMAEASVAKAMIKLINKSFKEGNTNTTCIEKALRIVHVLWSNDQYSMKTLVGEDLDFINSLTWIVRLHLDENNIKMVNEAMPLLKLTIEVVDSTLLGNLSLEFFKEMVRVLRKKRLSQQAIKYALWVLTETSTLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLALLCSCADGREQFLRHAAGIAVLSKRVFRVSAATDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKVWNNSPCIQNVL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0775 404 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gso12g0775 404 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gso12g0775 404 Gene3D - 101 403 IPR011989 -
Gso12g0775 404 SUPERFAMILY ARM repeat 233 388 IPR016024 -
Gso12g0775 404 SUPERFAMILY RING/U-box 3 84 - -
Gso12g0775 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 402 - -
Gso12g0775 404 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gso12g0775 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Gso12g0775 404 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0775 Gso-Chr12 7958073 7959578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0775 2 401 U-box Gene Family AT3G11840 41.216 4.46e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0775 - - gmx:100787426 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0775 12 7958073 7959578 Gso11g1338 11 14940408 14941999 GST
Gso12g1592 12 39465347 39466852 Gso12g0775 12 7958073 7959578 PCT
Gso11g3262 11 48410209 48411761 Gso12g0775 12 7958073 7959578 PCT
Gso12g0775 12 7958073 7959578 Gso12g1592 12 39465347 39466852 PCT
Gso12g0775 12 7958073 7959578 Gso11g3262 11 48410209 48411761 PCT