Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0773 ATGGCGACGTACTTTCATGGCAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCACAACACCCAACGCAAAACATGCTCCTCGTCAATCCCAACAACAACAACACTAGTAACACTAGTCCCACTTCCACCAACGCGCTCAACCTTGGTAACTTCTCCCACGCGCCGCCACCTCCTTCTCCCAACAACAACAACAACCACCGTGAACAACAACAACATCACCTGATTGGGGTTACCATTCCCTCTTCAAACATCCTTGGATCCAACGCTGCCGCCACCGACCCCGCTCGATCATCGTTCCTCGGACAACACGAATTCTCCAGCTTCCACGGTGGTGCTGCCGCCACCTCAACGGTGACAGCATCTCGTGGTAACTATAACTTATGGGGTTCCATAATTGATCAATCTGCGTTGAATATCATGGCAGCAACGACACACACCCCATCTAGTAACATGGGGTGTGTTGCCAGCAGTGTCATGTCGACGCAGATTGGATTCCACAGGCCTAATCATTTGTCACTGAGCCTATCTTCACAACAAACACCATATAGGTCTCTCTCTGGGGAGATTCATGCTATTTCTCCGGCGAGCCGTGGCGGTGGCGGCGATGATATGAGGGGCTTGCACAACGGGGTTTCTAGTATGCATAGTGTTGCTTTGGGTTCCAAGTATTTGAAAGCAACACAGGAGCTTCTTGATGAAGTTGTGAATGTGGGCAAGGGAATCTCCAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAGGAGAAGATGAAAGGGAATATTGAATCCACTTCTGGGGTTGGCGATGGTTCGAGCTGCGGAAGGGAGAATAATGATCGAGCCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGACCATGCTCGATGAGGTGGAGCAAAGGTACAGACAGTATCACCACCAAATGCAAGTTGTGCTAACATCGTTTGAGCAAGCAGCGGGTGTTGGTGCGGCAAAGTCTTACACGGCCCTTGCCTTGAAGACAATCTCAAAGCAATTTCGGTGTCTCAAAGATGCAATCTCTTCACAAATCAAGACAACTAGCAAGACCTTAGGTGAAGATAATTGCCTGGGAGTTAAGGTAGAGGGTTCGAGGCTAAGGTATGTTGATCATCAACAGAGACAACAACGTGCATTACAGCTTGGAATGATCCAACACAACGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTCTCTGTCCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCCTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGGTATCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTAGAAGAAATGTACTTGGAAGAGGTAAAACAAGAGCCAAACAATAGCTCCCAGGATAACAACAACACAAAAGGATCAAATGAATCAAGCAAGGAGTTATGGTCAGAAGCTAATGCTGCTGCACAAGAATCAGGTGCAATGAGATTTGATCAGATTAACATTCTCCAATCAAAGGCAGAAAGCTTCAAGAACAACCAAACCACTTCCCCAACAGAGATCTCCAATTCCAACTCACTCCAATCTGGTTTCCATCTTGCTGACATGCAAAGTCCAAACAAGCCAAAAAGCACTTCTGAGATGCATCAGAATTCTCCAGGTAGCATTCTTTCAGTGGACATGGAAATGAAGCCTCATCATCATGGAGAAACAAATAATATCACTAGAGAAGGCCAGAACAACAACACAACAACAAAGTTTGGCATTGAAAGCCATGGTGGGGGTTTTGGAGCATTTCCCAATATGGAAGACATTGGAAGGTTTCATCATCATGTCACAGAGCAACTTGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTCACTCTTGGACTTCCACACAGTACTGAGAATAACCTTTCCCTCTCAGGAACAACCCAACATGGATTCCTCTCACAGAACATGCACTTGGGAATGAGAAACAGTGAAAATGATGAGTTTTGTGGTGCAATCAACACTACCCCACCTTCTTCTCACTCAGGTATCAGTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGCTGCGCAGTTGTTGCGGGATTTCGTGGCTTAA 2226 0.4672 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPTQNMLLVNPNNNNTSNTSPTSTNALNLGNFSHAPPPPSPNNNNNHREQQQHHLIGVTIPSSNILGSNAAATDPARSSFLGQHEFSSFHGGAAATSTVTASRGNYNLWGSIIDQSALNIMAATTHTPSSNMGCVASSVMSTQIGFHRPNHLSLSLSSQQTPYRSLSGEIHAISPASRGGGGDDMRGLHNGVSSMHSVALGSKYLKATQELLDEVVNVGKGISKGEESMEGAKKEKMKGNIESTSGVGDGSSCGRENNDRAKQGVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVLTSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQIKTTSKTLGEDNCLGVKVEGSRLRYVDHQQRQQRALQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNSSQDNNNTKGSNESSKELWSEANAAAQESGAMRFDQINILQSKAESFKNNQTTSPTEISNSNSLQSGFHLADMQSPNKPKSTSEMHQNSPGSILSVDMEMKPHHHGETNNITREGQNNNTTTKFGIESHGGGFGAFPNMEDIGRFHHHVTEQLAPRFHGNGVSLTLGLPHSTENNLSLSGTTQHGFLSQNMHLGMRNSENDEFCGAINTTPPSSHSGISYESIDIQNRKRFAAQLLRDFVA* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0773 741 MobiDBLite consensus disorder prediction 43 68 - -
Gso12g0773 741 SUPERFAMILY Homeodomain-like 425 490 IPR009057 -
Gso12g0773 741 MobiDBLite consensus disorder prediction 495 522 - -
Gso12g0773 741 MobiDBLite consensus disorder prediction 568 589 - -
Gso12g0773 741 Pfam Associated with HOX 237 376 IPR006563 -
Gso12g0773 741 SMART HOX_1 424 488 IPR001356 GO:0003677
Gso12g0773 741 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 698 - -
Gso12g0773 741 MobiDBLite consensus disorder prediction 494 526 - -
Gso12g0773 741 Pfam Homeobox KN domain 441 480 IPR008422 GO:0003677|GO:0006355
Gso12g0773 741 ProSiteProfiles 'Homeobox' domain profile. 421 484 IPR001356 GO:0003677
Gso12g0773 741 Coils Coil 309 329 - -
Gso12g0773 741 Gene3D - 427 506 - -
Gso12g0773 741 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 698 - -
Gso12g0773 741 MobiDBLite consensus disorder prediction 264 295 - -
Gso12g0773 741 MobiDBLite consensus disorder prediction 43 85 - -
Gso12g0773 741 CDD homeodomain 424 485 IPR001356 GO:0003677
Gso12g0773 741 SMART prehox3 230 377 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0773 Gso-Chr12 7917775 7923441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0773 1 741 Homeobox Transcription Factor Family AT2G35940 41.730 2.27e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso12g0773 POX 3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0773 - - gmx:100786883 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0773 12 7917775 7923441 Gso11g1340 11 14984472 14990059 GST
Gso12g1591 12 39441674 39446903 Gso12g0773 12 7917775 7923441 PCT
Gso11g3263 11 48416062 48421142 Gso12g0773 12 7917775 7923441 PCT
Gso12g0773 12 7917775 7923441 Gso12g1591 12 39441674 39446903 PCT
Gso12g0773 12 7917775 7923441 Gso11g3263 11 48416062 48421142 PCT