Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0772 ATGGGGTTTTCGCTCAAAGAGGCTTTGAGGACTCTGTGCTCAAGGAATCGCTGGTCTTATGCCGTGTTCTGGAAGATCGGTTGTAATAATTCCAAGTTGTTAATCTGGGAAGATTACTACTACGAACCCTTGCCCTCTCCTTTCCCTCCACGAACTGTTGGGAGGTCTAATTTTCCTTACCAAGATGAGGAAGGATGTTGGTTTTCTTCTGAGTCTCAGCTAGGGATTCAGGAGGAGGACAGAGTCCGTGTATTGATCAACAAAATGATGGTGAATAATTCAGTCAGTATTGCTGGAGAAGGGATAGTTGGACGGGCAGCATTTACAGGAAACTATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCTTATCCACCAGAGGTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTCGCCGATAATGGAAGATATAGGATTTGTGAATGATGTAAAGAACTTTATCTTGCAATTGGGATGTGTACCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAAGTTTCTAATGAAAAATTCGCTGGACCTGTGACCGTTGATCCACCTGTCATTACTTCAAACTGCACTCCCTCGGTAGCTAATGGTTCCAACCAACTTACTAATTCTCCTCTTGCTTCAAGGCCTGTTGCTCAGCCACCTCATCCTCTAAGGGGAGGAATAAATAATTACCAGGGTTCTTTATTGACACCTCAAGCCTATAACCCGAACCAGGTATTTGATGGCATTTGCCAACCAAAGGCTCATTCAATGATCAAAACAAATGTCTGTGGCCAACCAAAGAAGACCATTGTTGAGGCTGAAGCTAAGGTGATACCTACAAATTTTGATTCATGTCTGCAACAACATTCTGTTTATAATGCTAGATCTGCATTCAATGAGTTATCTAGTTTCAATCAATCAAATCTGAGTGACGGCAGCCTTAAATATATGGAACAACAAACATCAGGTGTTGGGAGACAGAGTCAAGTTATTCCTAACGTGAATCCATCAAGTGCCTTAAATATGCCTCGGCTGAAAATCGATGGAGGTAAAATTCTTGAACAGAATCAGAGTTCTAGTGGCAGTTCACTACTCGGAGGAATCCCAATATGTAGTGGGAGTAATCTTTTGAGGACAAATATGATTAACTGCTCACTTTCAAATCCTCCCAAAGTATCCACTAACACTTCTGATTTTTCTGGAATGTACAAGGTTGGGTTTGGACTCCAAAGTAACAATACAACAACTAATGCTGTGCTTTGTTCTGTGCCTAATTTCACTAATCAATCAGTTACCAATCACATGAATCTAGAAGGCTCTGGTCAGAAAAGTCTTTCCATTGATTTAAAGCAAGTGTGGGATGCCTTTGCGTCAACTGATCAAAGGATAGATGATGATTTGCTTCAGGCCGCCCTTAAGATTCCATCTCTTCATCTGGAGGAGCATGTGCCTATGGGTGATCACATCTCTGGTTTTGTTCAAGATTGCCTCAGTAAAGATCTTACTAGTCAACATATGATGAAAATGAATGTTAAGCATGCAGAAGCCGATGCTCAACTTCCATCAGGTGATGACCTCTTCGATGTTTTGGGCGTGGATTTGAAAAGGAGACTACTCAATGGAAACCGGAATGAGTTGCTTGCCACTGATTCAGATGCCATCACAGAACATCTAGATAAAAAGGCAACACACATGAATTTGCAAGGTGTAGGTCCTAATAATAGTTATTCAGTTAATGAAGCTATATCAGAAAGTGGCATCTTCTCTGGAACGGACACAGACCACCTTTTAGATGCTGTGGTTTTAAAAGCTCAATCTGCTGCAAAACAGAATTCTGATGAAATGTCATGCAGGACAACATTGACAAGGATTAGTACCGCCTCAATTCCTTCTCCTGTCTGCAAGCAAGTTATGCCTGATCATGTTGCCCCGAGGGGATTGTTTGATTTTCCTAAGACCGGAGTTAAAACAGCTTCTGCAGAAACAAGTTCTCTTAGGTCTGGGTGTAGCAAGGATGATGCTGGAAACTGCTCTCAAACTACTTCCATATATGGGTCTAAGCTTAGTTCATGGGTTGAGAATAGTAGTAATTTTAAACGTGAAAGCAGTGTTTCAACTGGATACTCCAAGCGACCAGATGAAGTTTGCAAATCAAATCGTAAAAGACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAGGTTGGTGCACAATCAATGGTTTGTCCAATCATTGTTGAGGATCTCAATCCTCCTCGTCAGATGCTAGTAGAGATGCTTTGTGAGGAATGCGGTTTCTTTCTGGAAATAGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGAGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACCAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACGGTGAAGGGTGGTGCATCTTCGTCGAATGCAATTGATAACAACATGATGCTGTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGCAGGCCTAGTAGTTTGCAATGA 2874 0.4203 MGFSLKEALRTLCSRNRWSYAVFWKIGCNNSKLLIWEDYYYEPLPSPFPPRTVGRSNFPYQDEEGCWFSSESQLGIQEEDRVRVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDAYPPEVYPELHYQFSAGMQTVAVIPVLPHGVVQLGSFSPIMEDIGFVNDVKNFILQLGCVPGALLSEDYSAKVSNEKFAGPVTVDPPVITSNCTPSVANGSNQLTNSPLASRPVAQPPHPLRGGINNYQGSLLTPQAYNPNQVFDGICQPKAHSMIKTNVCGQPKKTIVEAEAKVIPTNFDSCLQQHSVYNARSAFNELSSFNQSNLSDGSLKYMEQQTSGVGRQSQVIPNVNPSSALNMPRLKIDGGKILEQNQSSSGSSLLGGIPICSGSNLLRTNMINCSLSNPPKVSTNTSDFSGMYKVGFGLQSNNTTTNAVLCSVPNFTNQSVTNHMNLEGSGQKSLSIDLKQVWDAFASTDQRIDDDLLQAALKIPSLHLEEHVPMGDHISGFVQDCLSKDLTSQHMMKMNVKHAEADAQLPSGDDLFDVLGVDLKRRLLNGNRNELLATDSDAITEHLDKKATHMNLQGVGPNNSYSVNEAISESGIFSGTDTDHLLDAVVLKAQSAAKQNSDEMSCRTTLTRISTASIPSPVCKQVMPDHVAPRGLFDFPKTGVKTASAETSSLRSGCSKDDAGNCSQTTSIYGSKLSSWVENSSNFKRESSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGAQSMVCPIIVEDLNPPRQMLVEMLCEECGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTVKGGASSSNAIDNNMMLYHSFPQATQIPATGRPSSLQ* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0772 957 MobiDBLite consensus disorder prediction 722 758 - -
Gso12g0772 957 MobiDBLite consensus disorder prediction 219 235 - -
Gso12g0772 957 CDD bHLH_AtLHW_like 748 817 - -
Gso12g0772 957 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 175 IPR025610 -
Gso12g0772 957 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 744 793 IPR011598 GO:0046983
Gso12g0772 957 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 957 IPR043561 GO:0003700|GO:0006355
Gso12g0772 957 MobiDBLite consensus disorder prediction 734 758 - -
Gso12g0772 957 MobiDBLite consensus disorder prediction 219 249 - -
Gso12g0772 957 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0772 Gso-Chr12 7841134 7848368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0772 545 932 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.061 1.12e-115 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0772 - - gmx:100786351 1897.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0772 12 7841134 7848368 Gso11g1341 11 15060441 15067672 GST
Gso12g1590 12 39393878 39401548 Gso12g0772 12 7841134 7848368 PCT
Gso11g3264 11 48459878 48467172 Gso12g0772 12 7841134 7848368 PCT
Gso12g0772 12 7841134 7848368 Gso12g1590 12 39393878 39401548 PCT
Gso12g0772 12 7841134 7848368 Gso11g3264 11 48459878 48467172 PCT