Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0766 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCGGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATAAGGCTTGCAAGACAGACTGAACGGTGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGAGTACCTGCATTCGAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAAGATCGAGATGTTCGCCTAGGGGATTTCGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCTAATTACATGTGCCCTGAACTGCTTGCTGATATTCCATATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTACTTGGATCAATATCGTCCATCTTTCAGTCCTCCAACCTCCTGTTCTCCTGAAAAACCAATTTCTGCTGTCAATAATCATCCAAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCAAGTAGTGACAAAGATAGTTTGATGTCAAATGAGAAAAAAATTGCACCAGCAGGACCGAAGTGTTATAACAAAGCCATTGAGACGGATCAAATATCAATTGATGATGATGGCTCAGAGGATGAAAGTGGCTCTAGTAATGCTAATGCCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTAATAATGAACACCATTCTAATGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAGGAAGGAAAAGTTAGAGAAGCAACTTCTCCAATGAGAGGCAACCGCATAAAGCCTGGAGGCATATCAACGCAAAAAATAAACACAGAGACATTGTCTAAATTGCCTAAGCCTACTTTTATTGCTCCTAGTATGAAGCCTAATTTAGAATCACCTGCTGCACTTGCAAGGGCAAGTCCTGACCCTGCAAAAAGAATGATGGGTTCACATTATCCAAAGCATCAGATTCTGATGACAGAAGCCTCACCAAAAGTTAAAGCTAGACATGATTTGACTCCACCATCTGCACTTGCCAAACAAGTAGAAGGAGATGGATTTTCTCCCAAGCCAAGGCAAAGGACTCCTCCAAGCTCACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCAGCAAATGATACTGGGAAGCTAGGCTCAAATAAAATAATCCAGGAACCTGAGATGAGCCCTTGTCAATTGGCCAATGGCAATGTACCACATATTTCAAGACAAGTTACTAGAGAGCCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGCCTCATCTTCAGTTTCTATCAAAGGATGTGAACTTGCTGATGATGCAAAAACTTTCATTGACATGAGAGAGCAGATGCTTCCTAATCATGAGAAAGTAAACCACATTGTAGGTGTTGAAACATGTCCTGATAGGAGCCCACCTACAACTTGTGCACATTGTAAGATGGCTGAAAAAGTGCCTAAAGAAACCTGTGAGGTTACCATGAATTTTCAGAATACCATAAGTAGTAATGAGAAATTGAGTTCCAGTTTAACTCAAGATCACCGTGTTGAGGATTCCAAGGTAACACTTGCTTCAGAATGTGATCTTGTCATAAACCAGACAACTATATCTACTACCACTAGCTGTGATAAGAGATCTGTAGACCCCTCTGCTGGAGCCACCAAAGAAATCAAAGAATTTCAAGATATAACCAAGGAAATTCTTTTAACCAAGTCTCCTAAAGAAATCAAAGATTTTCAATATATTTCCAAGGAAATGCCTATGATCAAGTCTCCCAAACAAGCACCTCCAAGTTCTGGAGAAAAGTCTGTTCATGTAGAAGTTAGTCCAGTAAGTGAACCAGATATAGTTAGCCAGCCAGCACTTGGATGTAAGTCCCCAGGTGATGACAAATTCACAGTGAGGGAGCGACTGTCACCGGCAGCTGAAACTGTTCCTGTGGTTGCCACTACTAAATTATCAAGCCAGAAACCGGCGGCTGAAACTGTTCCTGTGGTTACCACTAACAAATTATCAAGCCAGAAAGTTTTGCACGAGAAAGTAACTTTGCTGCAGAATCCAGCACAAGAAAGGCACGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTCATACGCCACAGTAGTTACCGTGTTGGAAGCGAGCAACCAGTTAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTCATCAATGTTGTGAGGGATGATTTGGAAATGAGGAACATAACCTCTCCTTTGACCACCCACAAATCTTCAACTTGCTCTGATGCTGCAAGCTTGAAATCAGACATTTCTGATCAGCTGCAAATGAAGAACTTGAACACTCCTCCAATCCTTAAATCTTCAAGTTTCTCTGATGCTTCGAGCATGAAATCAAGCATTTCTGATCATCCTGGTCTTAAGGAGCAAGATGTGAGTAACCCTTCTCCTATAGTTTCAGAACCTGATTCTGCAGAGCTCAGTAAATGCAACACTCCCATGAATGAAGAGAAACCACCGGCGGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAACTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACACTCTTCATGA 3222 0.4205 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDRDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYLDQYRPSFSPPTSCSPEKPISAVNNHPKNMAESQNSNSSSSDKDSLMSNEKKIAPAGPKCYNKAIETDQISIDDDGSEDESGSSNANAKTAEQEVMKPSNNEHHSNVESKQPKTIRNIMMALKEGKVREATSPMRGNRIKPGGISTQKINTETLSKLPKPTFIAPSMKPNLESPAALARASPDPAKRMMGSHYPKHQILMTEASPKVKARHDLTPPSALAKQVEGDGFSPKPRQRTPPSSLRRPSFSGRMRLAGIDVPNAANDTGKLGSNKIIQEPEMSPCQLANGNVPHISRQVTREPQKAFERSSKGMQTDSSNSASSSVSIKGCELADDAKTFIDMREQMLPNHEKVNHIVGVETCPDRSPPTTCAHCKMAEKVPKETCEVTMNFQNTISSNEKLSSSLTQDHRVEDSKVTLASECDLVINQTTISTTTSCDKRSVDPSAGATKEIKEFQDITKEILLTKSPKEIKDFQYISKEMPMIKSPKQAPPSSGEKSVHVEVSPVSEPDIVSQPALGCKSPGDDKFTVRERLSPAAETVPVVATTKLSSQKPAAETVPVVTTNKLSSQKVLHEKVTLLQNPAQERHDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTTHKSSTCSDAASLKSDISDQLQMKNLNTPPILKSSSFSDASSMKSSISDHPGLKEQDVSNPSPIVSEPDSAELSKCNTPMNEEKPPAAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGHSS* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0766 1073 MobiDBLite consensus disorder prediction 346 360 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 272 309 - -
Gso12g0766 1073 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0766 1073 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1056 - -
Gso12g0766 1073 Coils Coil 999 1036 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 560 585 - -
Gso12g0766 1073 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gso12g0766 1073 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gso12g0766 1073 MobiDBLite consensus disorder prediction 939 1002 - -
Gso12g0766 1073 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0766 1073 CDD STKc_Nek 7 262 - -
Gso12g0766 1073 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
Gso12g0766 1073 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1056 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 337 377 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 939 989 - -
Gso12g0766 1073 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Gso12g0766 1073 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0766 1073 MobiDBLite consensus disorder prediction 570 585 - -
Gso12g0766 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso12g0766 1073 MobiDBLite consensus disorder prediction 272 313 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 485 512 - -
Gso12g0766 1073 MobiDBLite consensus disorder prediction 361 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0766 Gso-Chr12 7714350 7720952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0766 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 1.16e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso12g0766 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0766 K08857 - gmx:100784761 2043.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0766 12 7714350 7720952 Gso11g1346 11 15174279 15180993 GST
Gso12g1581 12 39299294 39307015 Gso12g0766 12 7714350 7720952 PCT
Gso11g3267 11 48495472 48502941 Gso12g0766 12 7714350 7720952 PCT
Gso12g0766 12 7714350 7720952 Gso12g1581 12 39299294 39307015 PCT
Gso12g0766 12 7714350 7720952 Gso11g3267 11 48495472 48502941 PCT