Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0760 ATGTCTTCCAATAAGAAAAGTCTTCTCAGAACCGTGTTCACAGCAAACGGAAGCTGTGGTTGCAGCAAAACAAAATCCTCTAAAGTGCACGAGCCAACACCAAAGTCGAAAACAACACACATTCACCAAAAGGAAAACAACAACCTTAGTAGCATGGCTTCTTCCACCACTTCCCCGGAGCAAGTTGATGAAGAAGAGTTCACTTCCACCACAATCTCCGAATCCGAGACATTTCACGATCACAACAACAACAACAACAACAACGACAACAACAATATTGTACTCAAACGAAGCCCCCTGGTGAATAGCGTGGCGATTGAGAAGGACTCTTCGAATCCGTATCATGATTTCAGGCACTCCATGCTCCAAATGATCTTTGAGAAGGAGATCGAGTCAGAGAACGACCTTCAAGACCTTCTGCAATGCTTTCTTCAGCTGAATGCGCAGTGTCATCACCACGTGATCGTTAAGGCCTTCAAGGAGATTTGCAAAGAAGCGTTTCCTCACAAGGTTATTACCACTTCTGTCGTGTCTGAACCATCTCCCTCTCACAAGAGCCCCCTCATTGTTCCAAAGAACCAATGA 585 0.4513 MSSNKKSLLRTVFTANGSCGCSKTKSSKVHEPTPKSKTTHIHQKENNNLSSMASSTTSPEQVDEEEFTSTTISESETFHDHNNNNNNNDNNNIVLKRSPLVNSVAIEKDSSNPYHDFRHSMLQMIFEKEIESENDLQDLLQCFLQLNAQCHHHVIVKAFKEICKEAFPHKVITTSVVSEPSPSHKSPLIVPKNQ* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0760 194 Pfam Transcriptional repressor, ovate 110 165 IPR006458 -
Gso12g0760 194 MobiDBLite consensus disorder prediction 43 93 - -
Gso12g0760 194 ProSiteProfiles OVATE domain profile. 106 165 IPR006458 -
Gso12g0760 194 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 173 IPR038933 GO:0045892
Gso12g0760 194 MobiDBLite consensus disorder prediction 28 42 - -
Gso12g0760 194 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 104 163 IPR006458 -
Gso12g0760 194 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso12g0760 194 MobiDBLite consensus disorder prediction 20 93 - -
Gso12g0760 194 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0760 Gso-Chr12 7658594 7659601 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso12g0760 Ovate 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0760 - - gmx:102667780 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0760 12 7658594 7659601 Gso11g1352 11 15239775 15241093 GST
Gso11g3271 11 48545676 48547039 Gso12g0760 12 7658594 7659601 PCT
Gso12g0760 12 7658594 7659601 Gso11g3271 11 48545676 48547039 PCT