Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0743 ATGGAAGAAGATTATCCACCCGGGTTTCGTTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACACAACAAGCTAGAAGGCCAAAGAAATGCCATAGCCATAGCCATAGACAGAGTTATCCCAGTTATTGACATCAATGGAGTTGAGCCTTGGAACCTTCCAACACTTGCTGGGGAGCTTTGTCGTGGGGACACGGAGCAATGGTTTTTCTTTTCGCCCGGTCAAGAGAGGGAAACCAGGGGAGGCAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAGGCTACAGGTTCTCCTTGCTATGTTTACTCTTCTCACAACAAAGTCATTGGGGTGAAGAAATCCATGGTCTTCTACAAAGGAAAAGCACCTATGGGAACAAAAACCAAATGGAAGATGAATGAATACAGAGCCATCCATGTCCCTTCCCAATCCACCCCTGCCACCCTTCATTTGACATGTGAATTCAGCTTGTGTCGGGTATATGTCATATCGGGGAGCTTTCGAGCATTTGATCGACGACCATTAGAGAAAGAAGGAGCAGAGTCGCGGGTTCATAGAATTGAGAATAATTTTGGTGGGGCACGTGCTCACCAAACTTGCCCTCACTCTCAGATGCTAGAAGCTGGAGAATCAAGTAGCACAAAGTGGGATGTGAATAATAATAATAATAATAATGGGTTCCAACTTCAAGAACCGTTGTGGGAATTGGAATGGGAACATTTTAATTGGCTCTAA 744 0.4543 MEEDYPPGFRFFPTEEELVGFYLHNKLEGQRNAIAIAIDRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPGQERETRGGRPSRTTACGYWKATGSPCYVYSSHNKVIGVKKSMVFYKGKAPMGTKTKWKMNEYRAIHVPSQSTPATLHLTCEFSLCRVYVISGSFRAFDRRPLEKEGAESRVHRIENNFGGARAHQTCPHSQMLEAGESSSTKWDVNNNNNNNGFQLQEPLWELEWEHFNWL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0743 247 Pfam No apical meristem (NAM) protein 6 139 IPR003441 GO:0003677|GO:0006355
Gso12g0743 247 Gene3D NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Gso12g0743 247 ProSiteProfiles NAC domain profile. 5 166 IPR003441 GO:0003677|GO:0006355
Gso12g0743 247 PANTHER NAC DOMAIN-CONTAINING PROTEIN 90 5 222 - -
Gso12g0743 247 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 222 - -
Gso12g0743 247 SUPERFAMILY NAC domain 4 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0743 Gso-Chr12 7493536 7495195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0743 1 246 NAC Transcription Factor Family AT5G22380 52.209 5.26e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g0743 NAM 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0743 - - gmx:100808618 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0743 12 7493536 7495195 Gso11g1373 11 15638158 15639835 GST
Gso12g1567 12 39145048 39146820 Gso12g0743 12 7493536 7495195 PCT
Gso11g3282 11 48652348 48654997 Gso12g0743 12 7493536 7495195 PCT
Gso12g0743 12 7493536 7495195 Gso12g1567 12 39145048 39146820 PCT
Gso12g0743 12 7493536 7495195 Gso11g3282 11 48652348 48654997 PCT