Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0729 ATGCCTTGGGGAAAAGCAATTTCTTCATCAGCTGCTAAGTCATCCAAGCCTGAGGAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGCAAATGATCCAGAGGAAGCAATGGAAGAGGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAGATAGAAGAGGAAGTGGAAGAGGTGGAAGAAGAGGAGGAGGTAGAGGTGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGTGGAGGTTGAAGAGGTGGAAGAAGATGATGCCATGCAAAATCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAGAAAACATGCTGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGCCTCAGATGAGGATTTGAAATCTTTATGTGAGCGTATTGGTGAAGTTGCAGAGGTTCGAATAATGAAGGGAAAGGATTCTTCTGAGAACAAGGGCTTTGGTTTTGTGACTTTTACAAGTGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTAAATAATACAGAATTCATGGGTAAAAAAATAAAATGTTCGAAATCTCAAGCCAAGCACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTTGAAGATCTGAAGAAGATTGTAACTGAGATTGGACCTGGAGTTACTGGTGTGGAACTAGTCAAGGATATGAAGAACACCAACAATAACCGTGGCTTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAGTATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCCGAGTCCTCTGCTGCATCTCAGGTGAAGGCGGTTTATGTGAAGAACCTGCCAAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGCCATGGAAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGTCAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAGAAGGTCAACTTTTAGAATGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACACACAGAAGCCAGGACCAGGATTGCTTCCTAGCTATCCACCACATGTTGGCTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCAGGATATGCTGCTCCAGGTCTTGCACAGCCCTTGTTATATGGAGGAGGTCAAACTCCCGCTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCACATCATAGAGGTGGCAGGGGCGGTGGTGGCAGTGGGAGTGGCAACAGGAATGCCGGAAGTTCAAGTAAGGGAAGGCACAACAATGATGGCGGCCATGGGCGCAGATACCGGCCATATTAG 1527 0.4538 MPWGKAISSSAAKSSKPEEPVESDEKVDFEEANDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEVEEEEEVEVEEEEEEEEEEEEEEVEVEEVEEDDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIPHASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYRPY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0729 508 MobiDBLite consensus disorder prediction 378 399 - -
Gso12g0729 508 MobiDBLite consensus disorder prediction 1 116 - -
Gso12g0729 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 289 IPR000504 GO:0003723
Gso12g0729 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
Gso12g0729 508 SUPERFAMILY RNA-binding domain, RBD 125 292 IPR035979 GO:0003676
Gso12g0729 508 MobiDBLite consensus disorder prediction 459 508 - -
Gso12g0729 508 Gene3D - 289 397 IPR012677 -
Gso12g0729 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Gso12g0729 508 MobiDBLite consensus disorder prediction 24 98 - -
Gso12g0729 508 PANTHER RNA RECOGNITION MOTIF 1 481 - -
Gso12g0729 508 SUPERFAMILY RNA-binding domain, RBD 298 395 IPR035979 GO:0003676
Gso12g0729 508 SMART rrm1_1 129 201 IPR000504 GO:0003723
Gso12g0729 508 SMART rrm1_1 208 285 IPR000504 GO:0003723
Gso12g0729 508 SMART rrm1_1 302 375 IPR000504 GO:0003723
Gso12g0729 508 MobiDBLite consensus disorder prediction 381 395 - -
Gso12g0729 508 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 481 - -
Gso12g0729 508 Gene3D - 208 288 IPR012677 -
Gso12g0729 508 CDD RRM_SF 130 201 - -
Gso12g0729 508 Coils Coil 38 100 - -
Gso12g0729 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 371 IPR000504 GO:0003723
Gso12g0729 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 270 IPR000504 GO:0003723
Gso12g0729 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 199 IPR000504 GO:0003723
Gso12g0729 508 MobiDBLite consensus disorder prediction 99 116 - -
Gso12g0729 508 SMART rrm2_1 129 201 IPR003954 GO:0003676
Gso12g0729 508 SMART rrm2_1 302 375 IPR003954 GO:0003676
Gso12g0729 508 Gene3D - 65 207 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0729 Gso-Chr12 7380067 7386063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0729 130 468 Eukaryotic Initiation Factors Gene Family AT4G34110 25.789 2.11e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0729 K13161 - gmx:100806658 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0729 12 7380067 7386063 Gso11g1383 11 15785249 15795212 GST