Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0725 ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATGTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1218 0.4163 MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGCSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0725 405 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Gso12g0725 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 405 IPR044848 GO:0003700
Gso12g0725 405 Coils Coil 152 172 - -
Gso12g0725 405 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0725 405 PANTHER MYB-RELATED PROTEIN 2 4 405 - -
Gso12g0725 405 Gene3D - 45 103 - -
Gso12g0725 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gso12g0725 405 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gso12g0725 405 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gso12g0725 405 Pfam MYB-CC type transfactor, LHEQLE motif 151 196 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0725 Gso-Chr12 7349098 7352139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0725 78 405 G2-like Transcription Factor Family AT3G04030 48.665 3.11e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso12g0725 Myb_DNA-binding 7.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0725 - - gmx:100805237 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0725 12 7349098 7352139 Gso11g1387 11 15821256 15824904 GST
Gso12g1556 12 39044018 39047154 Gso12g0725 12 7349098 7352139 PCT
Gso11g3292 11 48724773 48728175 Gso12g0725 12 7349098 7352139 PCT
Gso12g0725 12 7349098 7352139 Gso12g1556 12 39044018 39047154 PCT
Gso12g0725 12 7349098 7352139 Gso11g3292 11 48724773 48728175 PCT