Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0721 ATGGCGAGCCAAAGAATTGGAGAAACGGGTTTGTCTGAGTCGGGACCTTCAAGTCACCATGTTCCTTATGGAGTTCTTCATGGGATTAGTACTTCATCAGGCCTAATCAATCAAGGGTCTGCTTTTGATTTTGGGGAGTTGGAAGAGGCAATTGTTCTGCAAGGAATTAAGATAAGAAATGATGAAGCCAAAGCATCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAGGAGGTTCAAAGTCCGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAACCAAAAATGAGCTAAGATTTGAAACAGAATCTCCAATAAGCATAAAAGCATCTCCTTCAGATCATCATCAGGCTTTTGATCAGCACCTTCAACAGCAGCAGCAACAACAACAACAACAACAGGAGACAGCAACAGCAGGCACATCATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAAGGAGCTGGTTCCACATCAGAGAAGCCACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTCACCCACCTTGAACAAGACCTTCAAAGAGCTCGCTCTCAGGGTGTGTTTATGGGATGTGGTGGTGCTGGTGGCAGTTTAAGTTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGTTGGAGGATGATCAGCGGCACATGGTGGAGCTCCGTTCGGGGCTGCAGGTGCCGCTGCCGGACGGCGAACTAAGAGTGATTGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTGAAAGGGGTGGCTGTTAAAACAGATGTGTTTCATCTTATTAATGGCATGTGGACTTCACCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCATCAGAGCTCATCACAATGTTGATACCACAGTTGGAGCCCCTAGTGGAGCAGCAAATTATGGGCATACATGGACTCCGGCATTCGTTAGTACAAGCAGAAGAAGCTCTCACTCAAGGTCTTGAACAGCTTCAGCAGTCTCTTGTTGACACCATCGCCGGCAGTCCCGTCGCCGACGGTGTTCAACAGATGGTGGCAGCCATGGGTAAGCTTGGCAACCTTGAAGGATTTGTTAGTCAGGCTGATAATTTGAGGCAAATAACCCTTCACCAATTATGTCGATTGCTGACAGTCCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTATTATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAATCTTCTCAAAATCATTTCTCAAGTTTCTGA 1473 0.4623 MASQRIGETGLSESGPSSHHVPYGVLHGISTSSGLINQGSAFDFGELEEAIVLQGIKIRNDEAKASLFTGRPSATLEMFPSWPMRFQQTSRGGSKSGGESTDSGSGVNTLSTKNELRFETESPISIKASPSDHHQAFDQHLQQQQQQQQQQQETATAGTSSQNQSAAKSPQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDLQRARSQGVFMGCGGAGGSLSSGAAMFDMEYARWLEDDQRHMVELRSGLQVPLPDGELRVIVDGYLSHYDEVFRLKGVAVKTDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIPQLEPLVEQQIMGIHGLRHSLVQAEEALTQGLEQLQQSLVDTIAGSPVADGVQQMVAAMGKLGNLEGFVSQADNLRQITLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRETLISDDNSCQTTTELQMVQSSQNHFSSF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0721 490 CDD bZIP_HBP1b-like 188 238 - -
Gso12g0721 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 230 IPR004827 GO:0003700|GO:0006355
Gso12g0721 490 MobiDBLite consensus disorder prediction 135 170 - -
Gso12g0721 490 Coils Coil 214 234 - -
Gso12g0721 490 MobiDBLite consensus disorder prediction 80 113 - -
Gso12g0721 490 MobiDBLite consensus disorder prediction 126 190 - -
Gso12g0721 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 191 206 IPR004827 GO:0003700|GO:0006355
Gso12g0721 490 PANTHER TRANSCRIPTION FACTOR TGA9 63 469 - -
Gso12g0721 490 ProSiteProfiles DOG1 domain profile. 251 459 IPR025422 GO:0006351|GO:0043565
Gso12g0721 490 MobiDBLite consensus disorder prediction 82 113 - -
Gso12g0721 490 Pfam Seed dormancy control 268 343 IPR025422 GO:0006351|GO:0043565
Gso12g0721 490 Gene3D - 187 235 - -
Gso12g0721 490 PANTHER TRANSCRIPTION FACTOR TGA9 63 469 - -
Gso12g0721 490 SUPERFAMILY Leucine zipper domain 188 230 IPR046347 GO:0003700|GO:0006355
Gso12g0721 490 SMART brlzneu 184 260 IPR004827 GO:0003700|GO:0006355
Gso12g0721 490 MobiDBLite consensus disorder prediction 175 190 - -
Gso12g0721 490 Pfam bZIP transcription factor 187 229 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0721 Gso-Chr12 7296750 7305286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0721 140 490 bZIP Transcription Factor Family AT1G08320 68.644 2.48e-179 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g0721 DOG1 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0721 K14431 - gmx:100101904 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0721 12 7296750 7305286 Gso11g1389 11 15881396 15889681 GST
Gso12g1554 12 39016202 39024646 Gso12g0721 12 7296750 7305286 PCT
Gso11g3294 11 48743841 48751788 Gso12g0721 12 7296750 7305286 PCT
Gso12g0721 12 7296750 7305286 Gso12g1554 12 39016202 39024646 PCT
Gso12g0721 12 7296750 7305286 Gso11g3294 11 48743841 48751788 PCT