Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0718 ATGGGTTTGATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTCATATCTAAATAATTCCAATACAATATCATACTCATCTTCTTCTTCTCCTTCTTCATCTTCTTTTTCTCTTACTCAGAATGAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAGAAGGCCTCAAAAGATGAAGATCAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTAACTGTGGCTTTGCACATTGGATTGCCTGACAGTAATAAAGGGCATGCTGATGAGGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAGTCATCAAAGAGAAGCTTCCATGGTTGCTCCTTTAACAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAATCATCCAAGGGCCAAGCCATTGAAGGACTTCAGAACCCTCCAAACCCATTACAAAAGAAAACATGGGACAAAGCCATTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTAAAGGATCATATTAGGTCTTTTGGAAAGGGACATAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 972 0.4074 MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNSYLNNSNTISYSSSSSPSSSSFSLTQNEFVQETIQFLPILSEKASKDEDQSFEVKEEKVEQVTVALHIGLPDSNKGHADEVDEKMIFHVKEEEESSKRSFHGCSFNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0718 323 Gene3D Classic Zinc Finger 239 299 - -
Gso12g0718 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Gso12g0718 323 PANTHER ZINC FINGER PROTEIN WIP2 1 321 IPR043584 GO:0003700|GO:0010468
Gso12g0718 323 SUPERFAMILY beta-beta-alpha zinc fingers 229 263 IPR036236 -
Gso12g0718 323 SUPERFAMILY beta-beta-alpha zinc fingers 150 182 IPR036236 -
Gso12g0718 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 263 IPR013087 -
Gso12g0718 323 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 321 - -
Gso12g0718 323 Pfam Zinc finger, C2H2 type 159 178 IPR013087 -
Gso12g0718 323 SMART c2h2final6 243 263 IPR013087 -
Gso12g0718 323 SMART c2h2final6 159 181 IPR013087 -
Gso12g0718 323 SMART c2h2final6 206 238 IPR013087 -
Gso12g0718 323 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Gso12g0718 323 Gene3D Classic Zinc Finger 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0718 Gso-Chr12 7234875 7238676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0718 7 311 C2H2 Transcription Factor Family AT1G08290 56.305 2.26e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0718 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0718 - - gmx:100802773 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0718 12 7234875 7238676 Gso11g1391 11 15944795 15948581 GST
Gso12g1548 12 38946113 38950268 Gso12g0718 12 7234875 7238676 PCT
Gso11g3297 11 48778062 48781894 Gso12g0718 12 7234875 7238676 PCT
Gso12g0718 12 7234875 7238676 Gso12g1548 12 38946113 38950268 PCT
Gso12g0718 12 7234875 7238676 Gso11g3297 11 48778062 48781894 PCT