Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0712 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTACGCGAAAGCGTTTCAACTTTACATGAACGCGTTGGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACAAGGCCCAAGACGAAGCCCAAGGACGGAGGCAAAGATGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTACGGGCCGGGCTCAACTCCGCTATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGTGAAAGTGCACCTTCTATCATATTCGTTGATGAAATAGACTCTCTATGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAGGAATCCTGAGGATATGTGGATCCCATGTGGACCAAAGCAACAGAGTGCAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACCGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCACAAAGGAATTCGGAGAGGAAGGATAA 1305 0.4904 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFRNPEDMWIPCGPKQQSAVQTTMQDLAAKGLASKILPPPISRTDFDKVLARQRPTVSKSDLDVHERFTKEFGEEG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0712 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Gso12g0712 434 SMART smart 2 79 IPR007330 -
Gso12g0712 434 CDD AAA 134 297 - -
Gso12g0712 434 CDD MIT_VPS4 4 76 IPR045253 -
Gso12g0712 434 MobiDBLite consensus disorder prediction 73 110 - -
Gso12g0712 434 Gene3D - 6 75 - -
Gso12g0712 434 MobiDBLite consensus disorder prediction 91 110 - -
Gso12g0712 434 Gene3D - 126 422 IPR027417 -
Gso12g0712 434 Gene3D - 299 414 - -
Gso12g0712 434 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 434 - -
Gso12g0712 434 SUPERFAMILY MIT domain 2 82 IPR036181 -
Gso12g0712 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Gso12g0712 434 PANTHER AAA DOMAIN-CONTAINING 1 434 - -
Gso12g0712 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Gso12g0712 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Gso12g0712 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gso12g0712 434 SMART AAA_5 163 299 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0712 Gso-Chr12 7195427 7199646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0712 162 355 Calmodulin-binding Proteins AT3G56690 36.735 1.06e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0712 K12196 - gmx:100801165 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0712 12 7195427 7199646 Gso11g1397 11 16000398 16007872 GST
Gso12g1546 12 38909323 38916290 Gso12g0712 12 7195427 7199646 PCT
Gso11g3299 11 48805220 48809382 Gso12g0712 12 7195427 7199646 PCT
Gso12g0712 12 7195427 7199646 Gso12g1546 12 38909323 38916290 PCT
Gso12g0712 12 7195427 7199646 Gso11g3299 11 48805220 48809382 PCT