Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0707 ATGAGCGGCGATGGCCGGAGACGTGACCGGAGAGACAACAGAGCATCCAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCGAAATTAGGGTTCGATCTCTTCTCAGAAGGTGAAAAGCGTCTAGGATGGTTACTCACTTTTGCATCCTCTTCTGTTGACGATGAAGACAGTTACAAAGTGTACAGTTGCGTTGATCTTTACTTTGTTGCACAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCCTATTTCTATGTAGCTACAAAGGATAAAATGGAGATTGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAAAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGACCTGATGCCTACTGTTGAAAGAAATAAGGCCAAGTCTGATGCTGCAGAAGCTTTTTTGTCCGTGTCAACAGAAAGAAGAGAACATAGACCTCAAGATTTTCTAGATTGCATAACCGATGTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAGTAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGCGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGATTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGCTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACGTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGATATGAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCAGTTACAAAAGCAAAGTTGGGATATGATCCATTGGAGGTGAATCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTGTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGTCCTAACAAACATCAATCTGACCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCCATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGCACCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCCATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCTAAGAAAAGTGACTATTATGCTTTAAAGACACAAATTGAATCAGAGTTTGTTGATGATTCTGAGAAGAACAACAAAGCCTTGACCCACTATTCTGAGAAGTCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAACTTCGAGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGATACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAGTTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTACTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACACAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCACAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTCGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACTTTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAAATGGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTCAGCAAAAATCTTGTGCTGTTACCACTGCTAGACGTCTGGCTGACTTTCTTGGCGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAATTTCGCCAACGGAAATTAGTTGATGCCTTTAAATCAATGAATAGGAATGAACACTCAAAAAGGCATGATGACTCAACTCGTGTCCCTCTTGTCATGGATGGTGATATTGTTAATGAGTTGGAGGACTTTGGAAATAAGGACAGGAGTTCTACATGCAGACCTAGACCAATTATACGGCATTATGAAGCTAACAATGAACAACATTCAAGGAAGGTCTATGATCAAGAAGATGTGGAGCAGCAGCATAATAAACCATTACAACAAAATGTTTACAGAAGTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGCAAACGTGGAAAGATATTCTGGAAAGGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAAATCTGACCGTGTTAGTAGTGTTCTTGAACAAATGAATGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGCGTCACTGGCAGATAATACAACTAGTCCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCATGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCAGCAATTACTGAAGGATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCCAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCACTGGAATTTAATGCAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAGACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTAAGTGAATTGCACATGAAGACCACAGCAGAATGTGCTTATCTTGAACAATCTATATCTTTCTTTTATTTTTACCATAGCATCTCTGAGGGACGGGCTATATACATTGGATATTTTCCTGCATCAAAAACAATGACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATCCCCGGTTTTTCTTGAAAGACATTTTCATGATGCTTGCCAGTCTTTGTCTATTGAGCCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAAAGAGCAATAAATGGCCACAGTCATGGGAGGGAAAATCACATGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCGAGCTCTGGATAATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAACTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCTGGGGAACTTTGAACTTGACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGAATTAACAGTGAACAGAACTGTTTTGTCGACGAGGTCCAACAACCTGCTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAATACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTAAGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACAAATGATCAAAATGGTTTTGACGAGTCTACCTCATGTGTACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCTGATGCAGTTACATCCGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCTGCTCTCCACCAGTTACTCCACAAGGTCATGCAGAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCTCAAAAATTATTATAGACACTGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAATCAAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAACAAAATCTGATGAAGCTGTAAATAATGAATCTCAAGTAGACATTATATCAAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTTTGTTTTCATCGTTTCTCAGTTCATGTATATTCCCTGGAATTATGCAAAAAAACAAGCACAAATCAGGGCCTCATTGCAGAATGGTGACTCCTGTACACCATCAATTAACATTGGAGCCGCAGAGGCTTTTGAATCAGAAATAACGGAATTTACCAAAGAGCAGATCGGCTCGTACTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGTATGAACAGATTAGAAAACAACCAGAGTACATCGGGCCTTCCTCCACTTACGGGTGATGTCCATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAAAATTTGCTCAAATATGTTGATGTTAAGGAGTTTGCTCCTGAAGCTAAGTTTCATGGTCCTTGTCATTCCTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGATTTGTGCCGTGATTCGGCTTTGTTAACTGAGGAGTGGCGTTGTGCAGTTCCACAGTGTGCCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAAACTGTAAGACAAAGAGAACGGCTGTACCACCTGCAAGATCTGGTGTGTACCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAAATTTTCTTGAACATAGCTTCTCGTCAGAAATTCCAACTTCTCCAAGAATGTACCTCTTGGATTTTAGAACTTAGATAG 6630 0.4033 MSGDGRRRDRRDNRASKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTFASSSVDDEDSYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDAAEAFLSVSTERREHRPQDFLDCITDVREYDVPYHVRFAIDNDIRCGQWYDVGVSSNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNAQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFKCDMNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSEKNNKALTHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKRHDDSTRVPLVMDGDIVNELEDFGNKDRSSTCRPRPIIRHYEANNEQHSRKVYDQEDVEQQHNKPLQQNVYRSVDYQGWLQIKKQTWKDILERRKKQRLENSKKSDRVSSVLEQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLIGQFFAWVVVDGSMHKIHVSVPRVFYLNSRSAITEGFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASQKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTAECAYLEQSISFFYFYHSISEGRAIYIGYFPASKTMTVVVVNPYQNKDLSPVFLERHFHDACQSLSIEPPPRNGINFKVDYVAHVKDAEAVMQRAINGHSHGRENHMPMVAVIECPNVQLVKLGIRALDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAASVQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINSEQNCFVDEVQQPALTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLRFGHELDSGAFSTNDQNGFDESTSCVQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPTKSDEAVNNESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEITEFTKEQIGSYFTHKLLGIVHDIGLHMKGMNRLENNQSTSGLPPLTGDVHRGDASLEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCAQPYDREVMENALLQTVRQRERLYHLQDLVCTRCHQVKAAHLAEQCACAGSFRCKEDASEFREKMQIFLNIASRQKFQLLQECTSWILELR* 2210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0707 2209 SUPERFAMILY Ribonuclease H-like 64 491 IPR012337 -
Gso12g0707 2209 Gene3D DNA Polymerase, chain B, domain 1 53 227 - -
Gso12g0707 2209 Gene3D Palm domain of DNA polymerase 764 948 IPR023211 -
Gso12g0707 2209 MobiDBLite consensus disorder prediction 1199 1226 - -
Gso12g0707 2209 Gene3D - 952 1136 IPR042087 -
Gso12g0707 2209 CDD POLBc_epsilon 504 1133 - -
Gso12g0707 2209 Gene3D - 239 469 IPR036397 GO:0003676
Gso12g0707 2209 SUPERFAMILY DNA/RNA polymerases 487 1126 IPR043502 -
Gso12g0707 2209 SMART polmehr3 240 853 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso12g0707 2209 CDD DNA_polB_epsilon_exo 241 444 - -
Gso12g0707 2209 Pfam Domain of unknown function (DUF1744) 1528 1896 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gso12g0707 2209 Pfam DNA polymerase family B, exonuclease domain 74 401 IPR006133 -
Gso12g0707 2209 Pfam DNA polymerase family B 766 1075 IPR006134 GO:0000166|GO:0003677
Gso12g0707 2209 MobiDBLite consensus disorder prediction 1 27 - -
Gso12g0707 2209 SMART DUF1744_2 1510 1896 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gso12g0707 2209 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 2206 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0707 Gso-Chr12 7062233 7085327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0707 5 2206 Core DNA Replication Machinery Family AT2G27120 67.408 0.0 3022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0707 K02324 - gmx:100812003 4434.79