Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0705 CTCAATGAAAAGAGAAAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTATCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAACAATCCTGA 879 0.4403 LNEKRKKKKTKRIIFIGGRLKQKIIGCEACSVAPPTSNLRTVSYRVTTSEGIMSVINLRFCHCSQLLLLSPNPKLSSSSQTAKLTLRKKNPTTPFAISCKTRFSSSIRASMASPSITDAETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRDLNSKFKIDSAGTINYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFVDFDLILAMDKQNREDIFEAFNRWKDRHSLPDGAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKVLDLLEDACGSLLETILAENKHVQQS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0705 292 PRINTS LMW phosphotyrosine protein phosphatase signature 126 143 IPR017867 GO:0004725|GO:0006470
Gso12g0705 292 PRINTS LMW phosphotyrosine protein phosphatase signature 169 185 IPR017867 GO:0004725|GO:0006470
Gso12g0705 292 PRINTS LMW phosphotyrosine protein phosphatase signature 253 268 IPR017867 GO:0004725|GO:0006470
Gso12g0705 292 SMART LMWPc_2 124 281 IPR023485 -
Gso12g0705 292 Pfam Low molecular weight phosphotyrosine protein phosphatase 126 279 IPR023485 -
Gso12g0705 292 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 53 287 - -
Gso12g0705 292 SUPERFAMILY Phosphotyrosine protein phosphatases I 122 282 IPR036196 -
Gso12g0705 292 Gene3D - 108 287 - -
Gso12g0705 292 CDD LMWPTP 125 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0705 Gso-Chr12 7045852 7049269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0705 89 286 Protein tyrosine phosphatase (PTP) family AT3G44620 61.947 3.23e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0705 K25307 - gmx:100797254 557.37