Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0701 ATGGACTTTGAGATTATTAACGAATCTCCTGATTCCACTTCACTCTCCTCCCCCTCTTCACTCTCACCATGCACACCACCAAACTCTAATCCACTAAGTGATTCTCCAAATCCACAACCAAGTAATATATATACCAATCCATCTCACAAGAGAAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGCCACCCTGTGTATAGGGGTGTACGGCAAAGGAACAGGAACAAATGGGTGTGTGAAATAAGGGAACCAATAAAAAAATCAAGGATTTGGGTAGGGACATACCCTACTCCTGAAATGGCAGCTAGGGCACATGACGTGGCTGTCTTGGCACTTAGTGGCACCTCAGCAAACTTCAACTTCCCCGATTCAGTTTCCCTTCTCCCACTTGCAAAGTCACGTTCTGCTGTAGATATAAGAGAAGCAGCAAAAGCTACTACTACTGCTGAGGCTTTCATACCAAACACGGTCTTTGCTTGCTCTCACAAGAATGCTGAAGACACTTGTTTGAACATTGGCATGCACGATGATGGGTCCGAAATGTTCTTTGATGAGGAGGCAGTGTATAATATGCCAGGGTTGTTGGATAGTATGGCAGAGGGTTTGCTTATTACCCCGCCCTCTATGAAAAGAGCTATGGATTGGGACGATATCGGTTGTGTAATAGACCTCACTCTATGGACAAATTAA 690 0.4449 MDFEIINESPDSTSLSSPSSLSPCTPPNSNPLSDSPNPQPSNIYTNPSHKRKAGRKKFRETRHPVYRGVRQRNRNKWVCEIREPIKKSRIWVGTYPTPEMAARAHDVAVLALSGTSANFNFPDSVSLLPLAKSRSAVDIREAAKATTTAEAFIPNTVFACSHKNAEDTCLNIGMHDDGSEMFFDEEAVYNMPGLLDSMAEGLLITPPSMKRAMDWDDIGCVIDLTLWTN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0701 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Gso12g0701 229 MobiDBLite consensus disorder prediction 1 67 - -
Gso12g0701 229 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Gso12g0701 229 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Gso12g0701 229 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Gso12g0701 229 MobiDBLite consensus disorder prediction 49 63 - -
Gso12g0701 229 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Gso12g0701 229 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Gso12g0701 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 229 - -
Gso12g0701 229 MobiDBLite consensus disorder prediction 7 28 - -
Gso12g0701 229 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Gso12g0701 229 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Gso12g0701 229 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0701 Gso-Chr12 7007597 7008441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0701 30 228 AP2-EREBP Transcription Factor Family AT5G51990 45.192 1.32e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g0701 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0701 - - gmx:100810401 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0701 12 7007597 7008441 Gso11g1416 11 16304291 16305722 GST
Gso12g1534 12 38786338 38787111 Gso12g0701 12 7007597 7008441 PCT
Gso11g3311 11 48895635 48896386 Gso12g0701 12 7007597 7008441 PCT
Gso12g0701 12 7007597 7008441 Gso12g1534 12 38786338 38787111 PCT
Gso12g0701 12 7007597 7008441 Gso11g3311 11 48895635 48896386 PCT