Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0691 ATGGATGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTGTGGATTCATACATACACATTTCTCAGGTTGCGCTCGGAGAGGCGAAAAAGGACAAACCTAATGAACCTGTGGTTCTGTACTTGAAAGTTGGTGAACAGAAGATTGTTTTGGGAACCCTTTCTAGGGATGGCATCCCTCACCTATCATTGGATTTGGTTCTGGACTCCGATTCTGAGCTTTCCCACACTTCAAAAAGTGCTAGTGTCTTTTTCTGTGGATACAAAGTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTGATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGGAAAACCTGAATTAAAAGCTGAAGGTGCAAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAACTGCTGATCCTAAGAAAGACGAGGATGATGATTCCGATGATGAATTGGATGATGATCTTGCTGGTGAAGATGAATCTGGAAGTTCCGATGAGATGGATGATGATAGCAATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGGTGGATCAGGGAAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCTTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAAGGTGGGAAAACTCCCAACAGTACAAAAGGCCCAAAAGGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA 909 0.4345 MDAPMEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAEGAKVTKPSKSIPKIGAPAKTADPKKDEDDDSDDELDDDLAGEDESGSSDEMDDDSNSEEESDGDDEETPAKKVDQGKKRPNESAAKTLISAKKAKTATPEKTDGKKSVHVATPHPSKKGGKTPNSTKGPKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0691 302 MobiDBLite consensus disorder prediction 254 278 - -
Gso12g0691 302 MobiDBLite consensus disorder prediction 109 278 - -
Gso12g0691 302 ProSitePatterns Zinc finger C2H2 type domain signature. 278 299 IPR013087 -
Gso12g0691 302 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 298 - -
Gso12g0691 302 MobiDBLite consensus disorder prediction 124 139 - -
Gso12g0691 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 302 IPR013087 -
Gso12g0691 302 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 298 - -
Gso12g0691 302 MobiDBLite consensus disorder prediction 232 246 - -
Gso12g0691 302 MobiDBLite consensus disorder prediction 202 217 - -
Gso12g0691 302 Gene3D Nucleoplasmin core domain 2 105 - -
Gso12g0691 302 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Gso12g0691 302 MobiDBLite consensus disorder prediction 163 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0691 Gso-Chr12 6871939 6875298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0691 5 299 C2H2 Transcription Factor Family AT5G03740 40.635 5.06e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0691 NPL 1.4e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0691 - - gmx:547649 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0691 12 6871939 6875298 Gso11g1427 11 16443726 16446721 GST
Gso12g1523 12 38645720 38648999 Gso12g0691 12 6871939 6875298 PCT
Gso11g3321 11 48990333 48993435 Gso12g0691 12 6871939 6875298 PCT
Gso12g0691 12 6871939 6875298 Gso12g1523 12 38645720 38648999 PCT
Gso12g0691 12 6871939 6875298 Gso11g3321 11 48990333 48993435 PCT