Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0688 ATGGAGAAACAGAACCATACGACAGACACTGATGAGTTTTCGACTCTGGGCCCCACATCGAACGAGCCACACACTCCAATGGTGCATGTCAACGCCGACAACAACAACAACAACGTTGTTAGCGCCGCCGTTAACGTTGGAGTTGGTTCTGTTTCGGAGCTTGTTGTGGCTGTAGCAAAGTCCGAGGCTGTAGGTTCGGGACAGATGGTGAAGAGAGGGAGGGGGAGGCCTCGGAAGTACGACGCTGTCGGGAGTGCTGTGTTGCCGGCGACGACGGGACCGCCGGGATTTTCTGATCAGACTGTCAAGAGAGGTCGGGGACGCCCCCGTGGTTCTGGGAAACTGCAGATTCTAGCTTCCATTGGTGGTTTTGTGGCAGAAACAGCTGGGGGAAGCATCATACCTCATGTGCTGACTGTGAAAATTGGAGAGGATTTGGTCAGCACCATAATGTCATTTTTTGACAAAGGCCCTCGAGCAGTTTGCATACTTTCTGCCACTGGTGCTGTTTCAGATGTGGCCATTCGCCAAAATGGTGCTTCTCATGTTATTATGAGACTTGAGGGTACCTTTGAGATATTGTCTTTATCTGGAGCATGTACCTACACTAGTAGCCCTTCTGGTCTAGTTCGTAAAACTGGCTCGTTGAGTGTTTCATTGGCTAGAACTGATGGGAGAGTTTTTGGAGGTGTTCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAACTTGTTATGGCCTCTTTCAAGCAAAACATCAGCAGCCAACAAATTAAGAGAAAACAGTTGTCTGAATCTTCTAATGCACCCCTTATGCTGTGCAATTCAGATTCAGAAAGGGACCAACTGAAACTTCCAAAGTTGACAGGAGGTGAGAAGAGTTGTCCTTCACCACCACCAACAACACTTGAGCCAACAGCAACAGCTAATGGTGTAGCAGATAATGTCTTTGTTGCAACATCCAATGGAATGGTAGATAATGCTATTACTCCAGATCACAACGTGCACTCTCCCTCTGTTAATGGTGTTGTTGATTTAGACAGCCAGGCCCCGCAGCCCGCATCAGACGATTCAGACCAAAGGACTTATGCAGATGTGAGTGCAAGTGTCATGGTGTTATGA 1122 0.4822 MEKQNHTTDTDEFSTLGPTSNEPHTPMVHVNADNNNNNVVSAAVNVGVGSVSELVVAVAKSEAVGSGQMVKRGRGRPRKYDAVGSAVLPATTGPPGFSDQTVKRGRGRPRGSGKLQILASIGGFVAETAGGSIIPHVLTVKIGEDLVSTIMSFFDKGPRAVCILSATGAVSDVAIRQNGASHVIMRLEGTFEILSLSGACTYTSSPSGLVRKTGSLSVSLARTDGRVFGGVLESALVAACPIQLVMASFKQNISSQQIKRKQLSESSNAPLMLCNSDSERDQLKLPKLTGGEKSCPSPPPTTLEPTATANGVADNVFVATSNGMVDNAITPDHNVHSPSVNGVVDLDSQAPQPASDDSDQRTYADVSASVMVL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0688 373 MobiDBLite consensus disorder prediction 287 309 - -
Gso12g0688 373 PANTHER DUF296 DOMAIN PROTEIN 1 362 - -
Gso12g0688 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 255 - -
Gso12g0688 373 SMART AT_hook_2 71 83 IPR017956 GO:0003677
Gso12g0688 373 SMART AT_hook_2 103 115 IPR017956 GO:0003677
Gso12g0688 373 Gene3D - 135 268 - -
Gso12g0688 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 250 IPR005175 -
Gso12g0688 373 MobiDBLite consensus disorder prediction 86 111 - -
Gso12g0688 373 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Gso12g0688 373 PRINTS AT-hook-like domain signature 71 81 IPR017956 GO:0003677
Gso12g0688 373 PRINTS AT-hook-like domain signature 101 112 IPR017956 GO:0003677
Gso12g0688 373 MobiDBLite consensus disorder prediction 328 362 - -
Gso12g0688 373 CDD DUF296 135 249 IPR005175 -
Gso12g0688 373 MobiDBLite consensus disorder prediction 10 34 - -
Gso12g0688 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 362 IPR039605 GO:0003680
Gso12g0688 373 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0688 Gso-Chr12 6815800 6819720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0688 70 262 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 45.876 5.94e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0688 - - gsj:114378162 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0688 12 6815800 6819720 Gso11g1429 11 16501085 16504964 GST