Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0686 ATGGAACCGCCGGCTGCTCGACCGAGGGGTCGACCGAGGAAACGAAGAAGAAAGGAGGAGGAGGAGAATGAGGCCGAAGCAAAAAGGCAGGCTATGGGAACGCGAGCCATAGCTTTGGTAGGGAGGTACGTGCTCAAGGATTTTCCCGGAAACGGAATTTTTCTCGGGAAAGTGGTGTACTATGAGTGCGGATTGTACCGGGTGAGTTACGAGGATGGCGATTTTGAGGATCTCGACAGTGGAGAGGTGCGCACCATTCTCGTGAAAGATGATGAGGAGTTTGATAAAGACTTCGCCCGGAGGAGGGCCGCGTTGGAGAAATTGGTGGCGAAGAAGAATAGTGTAAAGGCCAAAGATGTTTCGGAGAGCCGTGGTGAAGGGAGGGAGGAGCAATCGGCCGTTGGGGAGGCTGAATTGAAAGGTGGGTTGGTGTTGGAGAAAAATGAAGGAGAAGGGAACGAAAATGATATGGAGGATGATTCTTCCAGTGACTCAAGCTTCGGGGAAATCGAGTCTGGGACTACTGATGCAGAGTTACTGCCGCCTATGCCGCTGCCGCCGGAGTTGCCCTCGTCGTCCGGCACCATTGGTGTACCGGAGGAGTCTGTATCCCATTTGTTTGCTGTATACGGATTCCTCAGATCATTCAGCACCCAGTTATTTCTTATGCCATTCACACTGGACGAGTTTGTGGGTGCTGTAAATTGTCGTGTTCCAAACACGGTGTTCGATGCCGTTCACCTTTCCTTGATGAAAGTGTTGCGGAGGCATCTGGAAGCCCTCTCATCGGAGGGCTCAGAGATTGCTTCCAAATGTCTCAGGTGCTATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTTTTTGCAATTCAGTATTTAGTAGTCAGTGGACACACAACTGCTCATGAATGGCGAGGATTTTACAAAGAAGTTTCCACCGATGAATATTATTTGTTGCCTGTGAGTAGGAAGTTGATGATATTGCAAATTCTCTGTGATAATGCTCTGGAATCTGAGGAGATTGTAATGGAAATGAACATTCGGAGGGAATCAGAGGTTGGGATGGATTATGATGGAGAGGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATATGCCAATACTCCAGCTTCTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTCTATTTCATATTCCAGAGATACAGAAGGCACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTTTGTGGAATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCCGAGTGCAAAATCAATATGATGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCGGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACCTGCGAACACTTACTTGTGCTGAATATTGGGAATGATGAGTTTTGTCATAGATATTACAATCTGAATGACATTCCCAAGGTTCTCAAAGTGCTTTATGGATCCACGGAGCACAGGGCTATATATCATGATATTTGCATGGCTGTGCTTCAATATTGCAATATTCCAGAAAGTACTTTATTATTTCCTCCTTTGGGTGAAACCCCTCTAAGTCCTGCTACTCAATGCAATGGCAACGGTAGCAGCAACGAGTGCCCTTCTTCCAAGTGCTCTTTGGTAAATGGTCAAATTGGTAACTATGACCATGCAAATGATACAGTAAATCTTTCTTCCCAAACCAAAGAAAGCACACAAGCAGGTTTTGAAAAGTGTGAACGCAATGTAACCAATGATCCTGCATACATGGGTTTCTCCTATAAGCCTTTGTTGTACATTAATCACTATGCTCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGATCAGAGGGCCATGTGTCAGACAATCAGAGGAAAACTGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCGCGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAAGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCAGCTCTAAGTGCCACAAAAAGTGCTGTAAAAATGCTTGCTGGTTTTTCTCCTATAAGAAGTGGAGAGGCAATACTTCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCACCAACATTTAGTGCTATCAAACCACTTTTACTTAAACTTGAGGAGAACATTCGAACGATTGTTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCTCATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGTAGGCGTTACAAGAAGCGGTTAGCTAATGATGAAGCTACAGCTGATGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGGAAAGCAGCACGTCAAGGTGGTTCAAGAAAAATTTCTGGCATTTTTTATGCTGATGGCTCTGAAATTCCCAAGAGAAGTAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGGTACCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTGTTCAAGTGGAGCAAGATCCAGAAGGAAAGGAAAAGTATTGGTTTTTTGAAACACGTATTCCATTATATTTGATAAAAGAGTATGAAGAAGGTAATGGAAATATGCCATGTAATGAGGAGCACTTGAATACTGCATCTGAGTTGCTGCACAGAAGGCGGTTGAAGGCTATCTGCAAGGACATATTTTTTTACCTAACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTCGGGATGCTCACAAGTGCAATGCATGCCAAGGTTATTGTCACGAGGGCTGTTCAACAAGATCAACAGTCTCGGCAAATGAAGTTGAGTACTTGACTACATGCAAGCAATGCTACCATGCCAGATTACTTGCTCAGAAAGAGAATACTAATGAATCTCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACTCTGGGACATTTTTGAATGGATCAAGGCCTAAATCTCATGATCAAGTACTGAAATCTTCCAGGACAAAGGCTAATAATCCCAACGTGAAACAAGTTACTCCTGTGACGGCTTTGAAAGGAACAAAGGCTAAATATTATGAACAAGAACCGACTTCTACCAGGACAAAGGATAATAATCATTTTGGCACGCCTCAAGTTGCTTCTGAGGCCACTTTGACAGGAAAAAAACCTCGCAAAAATTGTTCTTGGGGTATTATATGGCAAAAGAAAAATAATGAAGATACAGACAATGATTTCTGGCTCAGAAACATACTTTTGAAAGGGGGTTCAAACATGCCACAGTTAAAACCTGTTTGTCACTTGTGTCGGAAGCCATATATGTCTGATCTGACGTATATTTGCTGTGAGACATGCCAAAATTGGTATCACGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCATACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACAAGGACTAAAAAGAAAGAGCATTCTGGAGCAGACTCCGATTCTGGAGCAATCTATTATGATATGAGAGATTGTGAAGTTGCTACTCCTGTCTTTCATGTAGAGGATGATCCCAGTCATGTCTTTCCTGTAGAGGGTGATCCTACTCACGTCTTTCCTGTAGAGGATGATCCTCTTCTTTTCTCTCTTTCGAGTGTTGAGCTGCTAACAGAACCTAAGATGGAAGGGGATGTTGAGTGGAACAGTGTCCCTGGGCCAGGGCTTCGGAAATTGCCAGTGAGAAGGAATGTTAAGCATGAAGGGGATGGTGATGTTTCTTTTGGAGGTATGCCTGCAGATGTATCTCCACCTTTAGAATATGCCTCTGCTGTTGACTTTGACAACAAGCTGCTGAATGACTCTGATAATGTAAACTATGATGATTACATGGATTTTGAACCCAATACCTATTTCTCTCTAACGGAACTGCTGCAGCCAGATGATGGTAGTCAGTTTGAGGGTGTTGATGTGTCTGCGGACTTGTCGGGATATTTGGAAAATTCTAGTACCCTTATTCCTGAAGAACGTGGAGATGATAAAACAGAACCTGCATTTTCCTTGCAAGACACCGGCGGGGACTTGTCAGGATATTTGGAAAATTCTATTACATTTATTCCTGAAGAATGTGGAGATGTTATGACAGAACCTACATTTTCCTTGCAAGACACTGGCTTTAGTTGTATGAAATGTTCACAAATGGAACCGGCCCCTGATCTCTTTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAAATACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGATTGGTAA 4935 0.4353 MEPPAARPRGRPRKRRRKEEEENEAEAKRQAMGTRAIALVGRYVLKDFPGNGIFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRTILVKDDEEFDKDFARRRAALEKLVAKKNSVKAKDVSESRGEGREEQSAVGEAELKGGLVLEKNEGEGNENDMEDDSSSDSSFGEIESGTTDAELLPPMPLPPELPSSSGTIGVPEESVSHLFAVYGFLRSFSTQLFLMPFTLDEFVGAVNCRVPNTVFDAVHLSLMKVLRRHLEALSSEGSEIASKCLRCYDWSLLDSLTWPVFAIQYLVVSGHTTAHEWRGFYKEVSTDEYYLLPVSRKLMILQILCDNALESEEIVMEMNIRRESEVGMDYDGEDILPSEVGLRRVQPRYANTPASEDKEATKFVSASNAVNQPGSSISYSRDTEGTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMMGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNDEFCHRYYNLNDIPKVLKVLYGSTEHRAIYHDICMAVLQYCNIPESTLLFPPLGETPLSPATQCNGNGSSNECPSSKCSLVNGQIGNYDHANDTVNLSSQTKESTQAGFEKCERNVTNDPAYMGFSYKPLLYINHYAHGDFAASAAAKFALLSSEESRSEGHVSDNQRKTASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALSATKSAVKMLAGFSPIRSGEAILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKQVEQAPTFSAIKPLLLKLEENIRTIVFCGDWVKLMDDWLVEFSMVQSASSTLGTAQKRAPSGRRYKKRLANDEATADGCPENFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSCYGIAFGSQKHLPSRVMKNVVQVEQDPEGKEKYWFFETRIPLYLIKEYEEGNGNMPCNEEHLNTASELLHRRRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAHKCNACQGYCHEGCSTRSTVSANEVEYLTTCKQCYHARLLAQKENTNESPTSPLLLQGRENNSGTFLNGSRPKSHDQVLKSSRTKANNPNVKQVTPVTALKGTKAKYYEQEPTSTRTKDNNHFGTPQVASEATLTGKKPRKNCSWGIIWQKKNNEDTDNDFWLRNILLKGGSNMPQLKPVCHLCRKPYMSDLTYICCETCQNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRTRTKKKEHSGADSDSGAIYYDMRDCEVATPVFHVEDDPSHVFPVEGDPTHVFPVEDDPLLFSLSSVELLTEPKMEGDVEWNSVPGPGLRKLPVRRNVKHEGDGDVSFGGMPADVSPPLEYASAVDFDNKLLNDSDNVNYDDYMDFEPNTYFSLTELLQPDDGSQFEGVDVSADLSGYLENSSTLIPEERGDDKTEPAFSLQDTGGDLSGYLENSITFIPEECGDVMTEPTFSLQDTGFSCMKCSQMEPAPDLFCEICGILIHSQCSPWVEIPSRLGSWRCGNCRDW* 1645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0686 1644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 474 IPR013083 -
Gso12g0686 1644 Pfam DDT domain 201 257 IPR018501 -
Gso12g0686 1644 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 1152 1196 - -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 399 418 - -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 116 196 - -
Gso12g0686 1644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1282 1341 IPR013083 -
Gso12g0686 1644 ProSitePatterns Zinc finger PHD-type signature. 426 467 IPR019786 -
Gso12g0686 1644 ProSiteProfiles Zinc finger PHD-type profile. 423 470 IPR019787 -
Gso12g0686 1644 Coils Coil 11 31 - -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 1348 1373 - -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 1 31 - -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 15 29 - -
Gso12g0686 1644 Pfam PHD-finger 426 468 IPR019787 -
Gso12g0686 1644 SUPERFAMILY FYVE/PHD zinc finger 398 469 IPR011011 -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 116 135 - -
Gso12g0686 1644 CDD PHD2_CHD_II 426 467 - -
Gso12g0686 1644 SMART PHD_3 425 468 IPR001965 -
Gso12g0686 1644 SMART PHD_3 1597 1642 IPR001965 -
Gso12g0686 1644 SMART PHD_3 1287 1335 IPR001965 -
Gso12g0686 1644 SMART PHD_3 1094 1142 IPR001965 -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 1217 1238 - -
Gso12g0686 1644 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1549 - -
Gso12g0686 1644 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1555 1642 - -
Gso12g0686 1644 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 303 347 IPR028942 -
Gso12g0686 1644 MobiDBLite consensus disorder prediction 1224 1238 - -
Gso12g0686 1644 SUPERFAMILY FYVE/PHD zinc finger 1286 1341 IPR011011 -
Gso12g0686 1644 PANTHER PHD FINGER FAMILY PROTEIN 2 1549 - -
Gso12g0686 1644 PANTHER PHD FINGER FAMILY PROTEIN 1555 1642 - -
Gso12g0686 1644 SMART testlast3 200 260 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0686 Gso-Chr12 6767907 6776971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0686 37 1644 PHD Transcription Factor Family AT5G35210 44.103 0.0 1208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso12g0686 DDT 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0686 - - gmx:100808261 3262.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1518 12 38558192 38565923 Gso12g0686 12 6767907 6776971 PCT
Gso11g3326 11 49052035 49059949 Gso12g0686 12 6767907 6776971 PCT
Gso12g0686 12 6767907 6776971 Gso12g1518 12 38558192 38565923 PCT
Gso12g0686 12 6767907 6776971 Gso11g3326 11 49052035 49059949 PCT