Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0682 ATGGAGAGAAGTGTTGATTACAGTTCAGAGGAGGAATGCACGGAGGATTATCGGCGTGGAGGATACCACGCGGTTCGAGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGCATTATGTAGCCCTTAAAATTCAGAAGAGTGCACAGCACTATACTGAAGCCGCGATGGATGAAATAAAGATTCTCAAACAAATAGCTGAGGGGGACCCGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCGGGGCCTAATGGCCAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGATAATCTTCTCACCCTTATCAAATATAGTGGCTATCGTGGGCTTCCTCTCCCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTGGATTACTTGCATCGCGAGCTTTCTGTCATTCACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAAATCCATCTAAAGATCCTAGGAAATCAGGTGCTCCACTCATCCTTCCAAACACCAAGGATAAGGCTGTGTCCAATAATGGGACTAACCAAGACAATAAAATTTTGAATGGAGATCCGATGAAGAACCAGAAAAAGAAAATGCAGAGGAAGGCTAAGGTAGCTCAAGGCTGTGTTGAGAAGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGACTCGAGCAAGAAGATAGTGGCAATGATGTGAAATTAAGTGTGGAATCAGTTGAAGATAAACATAATAGTTCTCTGAGTAAAGATGAATCGAGTTCATCTAAGATTTTTGAGAAGGATGTTTCACAAGGAAGTCATGGTCACAGGAGAGGCAGCCGTTCCATGAGAAAGAAGTTGCTGGAAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCCAAATATTCAACCCCTGCAGATTTATGGTCCTTTGCTTGCATTTGCTTCGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGAAGATGCCTCCCAAGATTGCACTAGGTGGTCGCTATTCCCGAGAATTTCTCAATAGACATGGTGACTTGAGGCACATCAGCAATTTGCGATTTTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAATGAGCAAGACACAAATGACTTGGTTGACTTCCTTGTTCCAATACTTGATTTTGTCCCGGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATGAGTGCAGGTCCTCGGACTCTTGAGTCCTCAATAACTACCGTGCAACCTGATGCCATCAACGAGGAATTGTCTAAAAGGAGGAAGAGGGAAACGGCTGAGAAGGAGGCAGTGGAAATTGGTTTGAGGAATATATCCATTAAAGAAACATCTGAGCCTCTCAAAGACTCCCAACCTCTAAAGTCATTCAAATAG 1620 0.4352 MERSVDYSSEEECTEDYRRGGYHAVRVGDAFNNGRYIVQSKLGWGHFSTVWLAWDTLNSHYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSGYRGLPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLINPSKDPRKSGAPLILPNTKDKAVSNNGTNQDNKILNGDPMKNQKKKMQRKAKVAQGCVEKETSEEAEDYKGLEQEDSGNDVKLSVESVEDKHNSSLSKDESSSSKIFEKDVSQGSHGHRRGSRSMRKKLLEAVDLKCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGKMPPKIALGGRYSREFLNRHGDLRHISNLRFWPMDKVLMDKYNFNEQDTNDLVDFLVPILDFVPEKRPTAAQCLSHPWMSAGPRTLESSITTVQPDAINEELSKRRKRETAEKEAVEIGLRNISIKETSEPLKDSQPLKSFK* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0682 539 Gene3D Transferase(Phosphotransferase) domain 1 119 477 - -
Gso12g0682 539 SMART serkin_6 36 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0682 539 PANTHER SERINE KINASE-LIKE PROTEIN 5 537 - -
Gso12g0682 539 Pfam Protein kinase domain 37 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0682 539 Pfam Protein kinase domain 313 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0682 539 MobiDBLite consensus disorder prediction 198 216 - -
Gso12g0682 539 MobiDBLite consensus disorder prediction 231 296 - -
Gso12g0682 539 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Gso12g0682 539 CDD STKc_SRPK 25 476 - -
Gso12g0682 539 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Gso12g0682 539 MobiDBLite consensus disorder prediction 185 302 - -
Gso12g0682 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Gso12g0682 539 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 537 - -
Gso12g0682 539 SUPERFAMILY Protein kinase-like (PK-like) 31 484 IPR011009 -
Gso12g0682 539 ProSiteProfiles Protein kinase domain profile. 36 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0682 Gso-Chr12 6716391 6720765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0682 6 522 EF-hand Containing Proteins AT5G22840 65.703 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso12g0682 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0682 K08832 - gmx:100790060 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1510 12 38489484 38493155 Gso12g0682 12 6716391 6720765 PCT
Gso11g3333 11 49112324 49115986 Gso12g0682 12 6716391 6720765 PCT
Gso12g0682 12 6716391 6720765 Gso12g1510 12 38489484 38493155 PCT
Gso12g0682 12 6716391 6720765 Gso11g3333 11 49112324 49115986 PCT