Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0678 ATGTCTCCTCGCGGTGGCTCCAAGCAGCAACCAGATTCACGCCGTCAAGCGCCACCGTCCGCGGCGGCGGCGGTGCCTTCTCCTCCCGGAAGAGGACGCGGCCGTGGACGCGGAGAATCCTCCGTTCCCGCGCCTTCTCTGGTGAATGCACCATCTGCTCCTCCTCCGGCTTCCACCATCGGCGTTCCGTCCGGCGCCGCGCCTTTTCGTGCTGCGTTGCCACCTCCGGCGGTGGAATCTCTCACTTCCGCGGTCGAAAAGCAACTTACAATGCAACCTTCGGCGCCGTCGTCGTCGAAGGCGGTGAGGTTCAAGGAACGGCCAGGGTTCGGTCTTGCTGGGGAGAAAATCAAAGTTCGAGCGAATCATTTTCAAGTCCAAGTCGCCGAACAAGATCTATTTCATTATGACGTCTCTATCAATCCGGAGATTACTTCGAAGAAGGTTTCTAGAGATGTTATGACTTTGCTTGTGCAAGCGCATCGTGAAAAGATTCTCGGAAATCGCATACCAGCCTACGATGGGGGAAAGAGTCTTTTCACCGCTGGATCCTTGCCCTTCGAATCTAAGGATTTTGTGATCGTGCTAAAAGACGACGATGAACCAGGCTCGTCGTCTTCTTCCTCTCCTACTAGGAAAAAACGTGAACGCGAGTATAGAGTCACCATCAGGCTTGCTTCCAGAACTGACATTCACCACCTCAGTCAGTTTCTCAGGCGCCGTCAGTTGGATTGTCCTTATGAGACTATCCAGGCTCTTGATGTTGTTCTGCGTGCTACACCGTCTGAAAGGTTCGTTGTTGTGGGAAGATCGTTCTTCTCACCTTCTTTGGGGAAACCTGGATCGCTTGGTAGCGGAACGGAGTACTGGAGGGGCTATTACCAGAGCCTTCGCCCAACTCAGATGGGCCTGTCTCTTAACATTAATGTGTCGGCGAGGGCTTTTTATGAGCCTATTCCTGTGATTGATTTCATTGAAAGTCATTTTAGGGCCAATCCTTCCAGGCCTTTGCCTGATCAGGATCGAATCAAGCTTAAGAGAGTACTGAGAGGAGTGAAGGTAGAAGTGACTCATGGAAAGAATCTTAGACGTTACAAGATCACTGGAGTCACAAAAGAACAACTCAGAAAGTTAATGTTTACTCTTGATGACAATAGAACAAAAAGCTCAGTTGTTCAATATTTTCATGAGAAATACAATATTGTGTTGAAGCATACGCTTCTTCCTGCTCTTCAAGCTGGTAGTGACATTAAACCAATTTTTCTGCCTATGGAGCTTTGTCAAATTGTGGCTGGACAAAGATATACAAAGAGATTGAATGAGGAGCAAGTAACTAATCTTTTAAGGGCATCTTGTCAGCGTCCTCGTGATAGAGAAAACTCTATCAGACAGGTGGTGAGGCAAAGTAATTTCAGCACAGACAAATTTGTGAGTCACTTTGGAATTCAAGTGAGGGAGGATCCAGCATTGCTTGATGCTCGAGTTCTTCCTGCACCAATGCTAAAATATCATGACACAGGTAGAGAATCAAGTGTTGAACCCAAAATGGGCCAATGGAATATGATTGATAAGAAAATGTTTAATGCTGGTGTTGTGGAACATTGGACTTGCCTCAACTTTTCTGGAAAAATAAACAGAGAGTTTCCAAGTGCATTTTGTCATAAGTTGGCCAGAATGTGTAGTAACAAGGGCATGCGTTTTAATTCAAAGCCTTTACTGCCCATAACATCTGCTCAAAGTAGTCAAATAGAGAGTGCTCTTGTAAATTTGCATAAGCAGTCTATTACAAGACTAGCAAACCAAGGAAGACTCCAATTGTTGATCATAATTTTGCCAGATTTCGAGGGGTCCTATGAAAAAATAAAGCGTATTTGTGAAACTGAGCTAGGAATAGTGTCTCAGTGTTGTCAGCCGAGGCATGTTTGCCAGATGAAGCCACAATATCTTGAAAATGTGGCCCTCAAGATAAATGTGAAGGTTGGTGGCAGTAACACAGTATTGAATGATGCAATTGCTAGAATAATTCCTCGTGTGTCTGACAGACCTACATTAATCTTGGGTGCGGATGTAACACATCCACAGCCAGGGGAAGATTCTAGTCCTTCTATTGCTGCAGTAGTTGCATCTATGGATTGGCCTTATGTAACAAGGTACAGAGGAGTTGTTTCTGCTCAGACTCACCGTGAAGAAATCATCCAAGATCTTTATAATACATGTGAAGATCCTGTGAAGGGGAAGGTGCATTCGGGAATTATCAGGGAGTTACTTCGCGCTTTCCGTTTGTCTACTAATCAGAAGCCAGAGAGGATTATATTCTACAGGGATGGAGTAAGTGAGGGCCAATTCAGCCAGGTTTTGCTGTACGAGATGGATGCAATACGGCGGGCTTGTGCTTCACTACAAGAAGGCTATTTACCCCGTGTTACTTTTGTGGTGGTCCAAAAACGACACCACACAAGGTTATTTCCTGTAGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGCTAACTGTGAGGTTAGATTGCCTTCGGTTAAGGAAAATGTGAAAGATGTGATGTTTTTCTGTTAA 2886 0.4532 MSPRGGSKQQPDSRRQAPPSAAAAVPSPPGRGRGRGRGESSVPAPSLVNAPSAPPPASTIGVPSGAAPFRAALPPPAVESLTSAVEKQLTMQPSAPSSSKAVRFKERPGFGLAGEKIKVRANHFQVQVAEQDLFHYDVSINPEITSKKVSRDVMTLLVQAHREKILGNRIPAYDGGKSLFTAGSLPFESKDFVIVLKDDDEPGSSSSSSPTRKKREREYRVTIRLASRTDIHHLSQFLRRRQLDCPYETIQALDVVLRATPSERFVVVGRSFFSPSLGKPGSLGSGTEYWRGYYQSLRPTQMGLSLNINVSARAFYEPIPVIDFIESHFRANPSRPLPDQDRIKLKRVLRGVKVEVTHGKNLRRYKITGVTKEQLRKLMFTLDDNRTKSSVVQYFHEKYNIVLKHTLLPALQAGSDIKPIFLPMELCQIVAGQRYTKRLNEEQVTNLLRASCQRPRDRENSIRQVVRQSNFSTDKFVSHFGIQVREDPALLDARVLPAPMLKYHDTGRESSVEPKMGQWNMIDKKMFNAGVVEHWTCLNFSGKINREFPSAFCHKLARMCSNKGMRFNSKPLLPITSAQSSQIESALVNLHKQSITRLANQGRLQLLIIILPDFEGSYEKIKRICETELGIVSQCCQPRHVCQMKPQYLENVALKINVKVGGSNTVLNDAIARIIPRVSDRPTLILGADVTHPQPGEDSSPSIAAVVASMDWPYVTRYRGVVSAQTHREEIIQDLYNTCEDPVKGKVHSGIIRELLRAFRLSTNQKPERIIFYRDGVSEGQFSQVLLYEMDAIRRACASLQEGYLPRVTFVVVQKRHHTRLFPVDHGSHDQTNKSGNIMPGTVVDTHICHPREFDFYLNSHAGMQGTSRPTHYHVLFDENNFTADGLQMFTNNLCYTYARCTRSVSIVPPVYYAHLAAFRARCYIEVATSDSGSASGGRAANCEVRLPSVKENVKDVMFFC* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0678 961 SUPERFAMILY PAZ domain 314 471 IPR036085 GO:0005515
Gso12g0678 961 Gene3D - 495 669 - -
Gso12g0678 961 SMART PAZ_2_a_3 323 462 IPR003100 GO:0005515
Gso12g0678 961 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Gso12g0678 961 Pfam Piwi domain 608 925 IPR003165 GO:0003676
Gso12g0678 961 SMART DUF1785_2 266 318 IPR014811 -
Gso12g0678 961 MobiDBLite consensus disorder prediction 1 16 - -
Gso12g0678 961 Pfam Argonaute linker 1 domain 268 317 IPR014811 -
Gso12g0678 961 Pfam Mid domain of argonaute 514 592 IPR032473 -
Gso12g0678 961 ProSiteProfiles PAZ domain profile. 319 431 IPR003100 GO:0005515
Gso12g0678 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 85 941 - -
Gso12g0678 961 Gene3D - 675 961 IPR036397 GO:0003676
Gso12g0678 961 CDD Piwi_ago-like 475 925 IPR045246 -
Gso12g0678 961 ProSiteProfiles Piwi domain profile. 606 926 IPR003165 GO:0003676
Gso12g0678 961 Pfam PAZ domain 344 448 IPR003100 GO:0005515
Gso12g0678 961 Pfam N-terminal domain of argonaute 116 257 IPR032474 -
Gso12g0678 961 MobiDBLite consensus disorder prediction 198 218 - -
Gso12g0678 961 Gene3D paz domain 313 435 - -
Gso12g0678 961 SUPERFAMILY Ribonuclease H-like 595 926 IPR012337 -
Gso12g0678 961 MobiDBLite consensus disorder prediction 1 71 - -
Gso12g0678 961 CDD PAZ_argonaute_like 318 430 - -
Gso12g0678 961 SMART Piwi_a_2 606 926 IPR003165 GO:0003676
Gso12g0678 961 PANTHER PROTEIN ARGONAUTE 1D 85 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0678 Gso-Chr12 6675021 6680990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0678 91 961 Eukaryotic Initiation Factors Gene Family AT1G48410 58.296 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0678 K11593 - gmx:100805246 1870.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0678 12 6675021 6680990 Gso11g1439 11 16642819 16648756 GST