Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0672 ATGGAATTCTGGAACCGCAGATTGCTACTACAGAACGAGGACGTTCCCCTCTCGATGCCACCTCTCTCTCACACTCACACCAAACACGCCACTAACGCATCATCATCCTCGCCGCCGCAATCTTCGGCTTTCCAATTCCAAAGCCCACTGCAGGTTTCGATTCCTCCAGTTTTTTCATCGAGTGTGGCCTACGTCTTCCTCATCCTCTTCACCACCTTCTTCTTCGTCGGCTTCGTCTTCCTCTACTTCCGCCAGTTCGCCTCCGACGCCGCCGCCGCCGGATCCTACCGCCGCCGCTGGGAGGAGGGCGCGGCAGCGGCGGCGGAGGCAAAGAAGTGCCTGCCGGTGGTGGCGCACTGCGGGGAGGGGTGCGCGGAGTGCGCGATATGCCTGGAGGAGCTGCGAGAGGGGGACGCGGTGAAGATGATTCCGTACTGCAAGCACGTGTTCCACCCGCACTGCATTGACACGTGGCTCGATAAGCATGTCACGTGCCCCGTGTGCCGGTGCAGTGAGCTGCTATGTGGAGAAGAGGTGGTGGGGTCGGTGTCAGCGAGAAGACAAGAAGAAGTGGTTCTAAATTTGGATTAG 591 0.5922 MEFWNRRLLLQNEDVPLSMPPLSHTHTKHATNASSSSPPQSSAFQFQSPLQVSIPPVFSSSVAYVFLILFTTFFFVGFVFLYFRQFASDAAAAGSYRRRWEEGAAAAAEAKKCLPVVAHCGEGCAECAICLEELREGDAVKMIPYCKHVFHPHCIDTWLDKHVTCPVCRCSELLCGEEVVGSVSARRQEEVVLNLD* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0672 196 PANTHER RING-H2 FINGER PROTEIN ATL57 32 186 - -
Gso12g0672 196 MobiDBLite consensus disorder prediction 24 40 - -
Gso12g0672 196 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Gso12g0672 196 Pfam Ring finger domain 126 169 IPR001841 -
Gso12g0672 196 SUPERFAMILY RING/U-box 126 171 - -
Gso12g0672 196 SMART ring_2 127 168 IPR001841 -
Gso12g0672 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 171 IPR013083 -
Gso12g0672 196 MobiDBLite consensus disorder prediction 19 40 - -
Gso12g0672 196 PANTHER RING FINGER DOMAIN-CONTAINING 32 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0672 Gso-Chr12 6576452 6577418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0672 58 171 Rapid Response to Elicitors AT3G05200 39.844 2.18e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0672 - K10664 gmx:102668652 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0672 12 6576452 6577418 Gso11g1445 11 16766866 16767501 GST