Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0671 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCGTTCCCAGTCATCTGGGAGAGGTGGAGATGGAAGGCGGGGAACCACCCGGTCATCTTCGCTCTTGCAAATGTGGCGAGAGATTGAGGAAGAACATGTGGTGAATCAAGTTCAAGGAAGACCTGATGAAGTACCTATTGAACAAAGGAGGGATGGGTTGGTTGCGGACCCTTCACAAGACATCCAAGAAAGAAGGCAGCAGCATGTTTTAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCGCAAAGTCAGAATGAATCCCATGATGGTAACGAGGATTTAAACAATTCTAGCTGTGATAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGAGAATGGATGAATAGTGGCGCTAGGGATCATGCATCAAACATTTCTGGAAGAAATAACGGTTCAAGGGGAGAATGGCTTGGGGAAACCGAGCAGGAAAGGGTGAGAGTTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCCTCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGATATGCAAATTGAACGTGTGCGTGATGGACTCGTTGTTAACCAGATTGGGGGCCAAACTGAGCATACACGGAGGGGCATACGTAAATTATGTGGCCGACAAGCTATGCTTGATATGCTTAAGAAGGCTGAGAGAGAAAGGCAAAGAGAAATTCAGGAGTTGTTGAACCATCAGGCCGTGTCACAATTCCCCTATCGAAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAAGCCCCTTTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAAGGATTTTTCTGTAGAAAGGAGAACAGTGGTTGCAGTCAAGCAACCAGCAATGCAGATACCTCATCTAATGTTGAAATTGATTTTAATACAAATGAACAAATGGGATCAAGCAGTTCACATATAGTCCCAATTGTACATCCTGAACAGTCTGACCCTAATCACAGAGGAAGCAATAGACTTGGGGTATCAGGCAGCCAGAACTGCGTACGAGGTACCGCGTGTGAGAATTTGGATTGGCAAGAATCTACTGCTCAAGCAGATCAGTTGCAGCATTTGCCAATTGAATCACTAGATTGTCAATCATCATTCAGCGCTTGTGTTGAAAGAGGGGACAACCCTGAGCAAAATGTTGATGTGATGCCAACTGAAGATGCTGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCAGAGCATAGTAATAATCAAGAATTCAGTGAGGTGCATAATGAGCCGTCTGAGCTGGGTGGTATAAATAATAGTCAAAACAATTCTTCAAATTACAACATTCATATGGAGGATAATGTTGTTGATGATGTAAATTGGAATGAATCTGGTGCTCTAGAAGGAGAACAGCCAGAAGAAGTTTTTGAAAATGAAGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCACTGAGGAAAATGTCGATGATAATCAGCTCAGCAATACAGCAAATGAGTGGCCTGACAACAGTTTGGCAAACGAGGATGGAGAAAACTCTCGTCTGCAAGAATCTCATGAAGTGTGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGATGACAACGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAACCTCCTTCGCAGCAGTTTTCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGGGAATTTCAAGAAACAACTCCTTCTTCTGCCTCAGTAGAGCAGGACCTTGAGCAGCATAGTAGGGATCAAATTGTTGGCCAGGAGGAGGTTACTGTTAGTCCACTTAACCTGCCCTCTTTACCTATACCACCTCCTCTGCCTATTTGGGACCAGCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAGCGATCTATAAGGCAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGCAGAAGGAATTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 2565 0.4331 MAIAGLHSVSVLDSSFLRDSRSQSSGRGGDGRRGTTRSSSLLQMWREIEEEHVVNQVQGRPDEVPIEQRRDGLVADPSQDIQERRQQHVLEDAVLGENESETWSQSQSQNESHDGNEDLNNSSCDNSSDLGEVERERVRQIFREWMNSGARDHASNISGRNNGSRGEWLGETEQERVRVIREWVQMSSQQRSVSSGENREEPSAEIDMQIERVRDGLVVNQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQREIQELLNHQAVSQFPYRNRIQALLRGRFLRNDRPVDNNKPLSVAESELGFLRRRQTVSGLREGFFCRKENSGCSQATSNADTSSNVEIDFNTNEQMGSSSSHIVPIVHPEQSDPNHRGSNRLGVSGSQNCVRGTACENLDWQESTAQADQLQHLPIESLDCQSSFSACVERGDNPEQNVDVMPTEDAANEITQQSLRIEDSEHSNNQEFSEVHNEPSELGGINNSQNNSSNYNIHMEDNVVDDVNWNESGALEGEQPEEVFENEGSEWYQNNTEWRNSTEENVDDNQLSNTANEWPDNSLANEDGENSRLQESHEVWQEDGGFQEAVENWLGGPSDHESAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHANIDWEFQETTPSSASVEQDLEQHSRDQIVGQEEVTVSPLNLPSLPIPPPLPIWDQHHHRDNWSQNDINNQRLVIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRNCPMCQAPVVEVIRAYSIQ* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0671 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 465 488 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 98 128 - -
Gso12g0671 854 PANTHER PROTEIN, PUTATIVE-RELATED 1 854 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 532 562 - -
Gso12g0671 854 SUPERFAMILY RING/U-box 801 847 - -
Gso12g0671 854 Coils Coil 730 757 - -
Gso12g0671 854 Coils Coil 239 266 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 96 133 - -
Gso12g0671 854 CDD mRING-HC-C3HC5_NEU1 802 840 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 17 38 - -
Gso12g0671 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 854 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 532 561 - -
Gso12g0671 854 MobiDBLite consensus disorder prediction 455 488 - -
Gso12g0671 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 852 IPR013083 -
Gso12g0671 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0671 Gso-Chr12 6567238 6572856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0671 802 848 C3H Transcription Factor Family AT3G06140 40.426 7.05e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0671 - - gmx:100804184 1601.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0671 12 6567238 6572856 Gso11g1446 11 16771732 16777084 GST
Gso12g1504 12 38374952 38380101 Gso12g0671 12 6567238 6572856 PCT
Gso11g3337 11 49161963 49173492 Gso12g0671 12 6567238 6572856 PCT
Gso12g0671 12 6567238 6572856 Gso12g1504 12 38374952 38380101 PCT
Gso12g0671 12 6567238 6572856 Gso11g3337 11 49161963 49173492 PCT