Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso12g0665 | ATGATGCCAATTAATGAGGCCACAATATCTAGCTCCACAAATGATTTTCAAGAACTGCACATGTTTCCTGTGGCAGTGAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCAGCTTCACACTCTTCAAACTCTCTCCTCTTCCACCTCTTACTTCTCAAGGACAAGCTAGGTCAACTCCAAAACCTAGTTGATGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACAATCAACAACGCAATCCAAGAAATCATAATGGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGATTCCTAGTTCCTCTTCAGGTACTAATACTACTAATGAATTGCAGCAGCAACAAATTGATCATGGTAGATTATTACCACCACATCATGAATCAAACTTTGTACACAACAATAGGGGTGTGGCTAGTAACAACATTAACATAGTCTCAGATATAAATAGAGGGCAAAGTTTCTTATTATCATCTAGTATTGAGGGAGAGGCATTGGATTGGTTTGCTGAAAGCTACAATAATAATAGAAATAGTGGTAATTATTGTAACCCTAAAGATGATGAAGCAGCCAACATTATTAGCAACATCATGGGGGAGATGAGTGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGACGCCAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACAAGTTCAGCCTTGTGCAACCCAATGAAAAACAACAAGGAGAACAGTAATTTGTTGTTATTAGGTGCAGAAGAAGGAAGTGGTGCCACAAAGAGATACTCGTGCCCTCAACAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTTCAACCCTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCGAAGATGTACGTGTGCAATAGGTGCAACCAGAAACATTTCTCGGTGATTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCTGTGCTCGTGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGCCATGTTGCTTTGTTCGTAGGGCACACCCCAGTTACTAGTGGCTTGTCATCATACTCAGGAAAATCAGAACAACTGTAA | 1191 | 0.424 | MMPINEATISSSTNDFQELHMFPVAVNEYLVSPSLEASSSSASHSSNSLLFHLLLLKDKLGQLQNLVDVLVSPQQNLPESTPTAISTINNAIQEIIMAATSMRFTCQQMIPSSSSGTNTTNELQQQQIDHGRLLPPHHESNFVHNNRGVASNNINIVSDINRGQSFLLSSSIEGEALDWFAESYNNNRNSGNYCNPKDDEAANIISNIMGEMSDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSSALCNPMKNNKENSNLLLLGAEEGSGATKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKHFSVISDLRTHEKHCGDPKWLCSCGTTFSRKDKLMGHVALFVGHTPVTSGLSSYSGKSEQL* | 397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso12g0665 | 396 | Gene3D | Classic Zinc Finger | 225 | 253 | - | - | |
Gso12g0665 | 396 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 229 | 256 | IPR013087 | - | |
Gso12g0665 | 396 | SUPERFAMILY | beta-beta-alpha zinc fingers | 227 | 265 | IPR036236 | - | |
Gso12g0665 | 396 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 15 | 389 | IPR044300 | GO:0010044|GO:0010447 | |
Gso12g0665 | 396 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 231 | 251 | IPR013087 | - | |
Gso12g0665 | 396 | PANTHER | OS08G0562300 PROTEIN | 15 | 389 | - | - | |
Gso12g0665 | 396 | SMART | c2h2final6 | 327 | 349 | IPR013087 | - | |
Gso12g0665 | 396 | SMART | c2h2final6 | 229 | 251 | IPR013087 | - | |
Gso12g0665 | 396 | SMART | c2h2final6 | 289 | 322 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso12g0665 | Gso-Chr12 | 6495143 | 6496474 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso12g0665 | 48 | 382 | C2H2 Transcription Factor Family | AT5G22890 | 50.296 | 3.95e-105 | 313 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso12g0665 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso12g0665 | - | - | gmx:100803120 | 728.398 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso12g0665 | 12 | 6495143 | 6496474 | Gso11g1450 | 11 | 16832581 | 16834578 | GST | |
Gso12g1501 | 12 | 38330328 | 38332792 | Gso12g0665 | 12 | 6495143 | 6496474 | PCT | |
Gso11g3342 | 11 | 49208510 | 49210733 | Gso12g0665 | 12 | 6495143 | 6496474 | PCT | |
Gso12g0665 | 12 | 6495143 | 6496474 | Gso12g1501 | 12 | 38330328 | 38332792 | PCT | |
Gso12g0665 | 12 | 6495143 | 6496474 | Gso11g3342 | 11 | 49208510 | 49210733 | PCT |