Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0665 ATGATGCCAATTAATGAGGCCACAATATCTAGCTCCACAAATGATTTTCAAGAACTGCACATGTTTCCTGTGGCAGTGAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCAGCTTCACACTCTTCAAACTCTCTCCTCTTCCACCTCTTACTTCTCAAGGACAAGCTAGGTCAACTCCAAAACCTAGTTGATGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACAATCAACAACGCAATCCAAGAAATCATAATGGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGATTCCTAGTTCCTCTTCAGGTACTAATACTACTAATGAATTGCAGCAGCAACAAATTGATCATGGTAGATTATTACCACCACATCATGAATCAAACTTTGTACACAACAATAGGGGTGTGGCTAGTAACAACATTAACATAGTCTCAGATATAAATAGAGGGCAAAGTTTCTTATTATCATCTAGTATTGAGGGAGAGGCATTGGATTGGTTTGCTGAAAGCTACAATAATAATAGAAATAGTGGTAATTATTGTAACCCTAAAGATGATGAAGCAGCCAACATTATTAGCAACATCATGGGGGAGATGAGTGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGACGCCAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACAAGTTCAGCCTTGTGCAACCCAATGAAAAACAACAAGGAGAACAGTAATTTGTTGTTATTAGGTGCAGAAGAAGGAAGTGGTGCCACAAAGAGATACTCGTGCCCTCAACAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTTCAACCCTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCGAAGATGTACGTGTGCAATAGGTGCAACCAGAAACATTTCTCGGTGATTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCTGTGCTCGTGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGCCATGTTGCTTTGTTCGTAGGGCACACCCCAGTTACTAGTGGCTTGTCATCATACTCAGGAAAATCAGAACAACTGTAA 1191 0.424 MMPINEATISSSTNDFQELHMFPVAVNEYLVSPSLEASSSSASHSSNSLLFHLLLLKDKLGQLQNLVDVLVSPQQNLPESTPTAISTINNAIQEIIMAATSMRFTCQQMIPSSSSGTNTTNELQQQQIDHGRLLPPHHESNFVHNNRGVASNNINIVSDINRGQSFLLSSSIEGEALDWFAESYNNNRNSGNYCNPKDDEAANIISNIMGEMSDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSSALCNPMKNNKENSNLLLLGAEEGSGATKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKHFSVISDLRTHEKHCGDPKWLCSCGTTFSRKDKLMGHVALFVGHTPVTSGLSSYSGKSEQL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0665 396 Gene3D Classic Zinc Finger 225 253 - -
Gso12g0665 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Gso12g0665 396 SUPERFAMILY beta-beta-alpha zinc fingers 227 265 IPR036236 -
Gso12g0665 396 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 15 389 IPR044300 GO:0010044|GO:0010447
Gso12g0665 396 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Gso12g0665 396 PANTHER OS08G0562300 PROTEIN 15 389 - -
Gso12g0665 396 SMART c2h2final6 327 349 IPR013087 -
Gso12g0665 396 SMART c2h2final6 229 251 IPR013087 -
Gso12g0665 396 SMART c2h2final6 289 322 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0665 Gso-Chr12 6495143 6496474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0665 48 382 C2H2 Transcription Factor Family AT5G22890 50.296 3.95e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0665 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0665 - - gmx:100803120 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0665 12 6495143 6496474 Gso11g1450 11 16832581 16834578 GST
Gso12g1501 12 38330328 38332792 Gso12g0665 12 6495143 6496474 PCT
Gso11g3342 11 49208510 49210733 Gso12g0665 12 6495143 6496474 PCT
Gso12g0665 12 6495143 6496474 Gso12g1501 12 38330328 38332792 PCT
Gso12g0665 12 6495143 6496474 Gso11g3342 11 49208510 49210733 PCT