Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0663 ATGGAAGGGTTGGATTCTAATAATTCTACCCACAACAGCATAGCCAAGGGCAAACGCACTAAGAGGATGAGGCTTTTGTCCCCTTGCGGTGTCATCGTTGCTGCCATCACCACCACCACCACCACCGTCACCTCGAGCACTTCGAGTGCTAATTCGGGTGCCTCGTCCACCACAACCTACGAGAGCGAAGAGGAGGACATGGCGAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCGTCATCATCCTCGTCACGACAAGCAACAAGTTGAAGATCATGGTCTTGAGAATTGTGATGATGGTGCCATCAAGACAGAAGAAAAGGGTAACAGCAGCAACGTTAACACTACCACCGCCGCAACAACAACTGCTGCTAATAATAATACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCACTGGGTGGACATAGGGCGAGTCACAAGAAGCCCAAACTCGCGGCTGAAGAGAAAAAACAACCACTGCCACCGTCACCGCTACCACCGCCAACACCGTCTCAATTGCAACACATGATTGTTACCAATTATGATCGGTTTGAGGAGGGTAGCGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTAATAATGGAAACAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGCTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACGCCAACAATGTTGTTGACACAACAAGATGTAACACTGTCATCACCACCACCATTACCGCGGTTCCACCGAGGAATATTTTGCAATTGGATCTTAACCTCCCGGCACCGGAGGATGATCTCCGAGAGGCTAAATTCCAATTTACAGCAACAAGTCAGGTGCTGGTTGGTACTCCGGCTTTGGTGGATTGTCATTATTAA 951 0.4774 MEGLDSNNSTHNSIAKGKRTKRMRLLSPCGVIVAAITTTTTTVTSSTSSANSGASSTTTYESEEEDMANCLILLAQGGESRHHPRHDKQQVEDHGLENCDDGAIKTEEKGNSSNVNTTTAATTTAANNNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPSPLPPPTPSQLQHMIVTNYDRFEEGSVKSGPPISLQLGNNGNNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNANNVVDTTRCNTVITTTITAVPPRNILQLDLNLPAPEDDLREAKFQFTATSQVLVGTPALVDCHY* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0663 316 Pfam C2H2-type zinc finger 137 162 - -
Gso12g0663 316 Pfam C2H2-type zinc finger 224 248 - -
Gso12g0663 316 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 316 - -
Gso12g0663 316 SMART c2h2final6 137 159 IPR013087 -
Gso12g0663 316 SMART c2h2final6 224 246 IPR013087 -
Gso12g0663 316 SUPERFAMILY beta-beta-alpha zinc fingers 136 246 IPR036236 -
Gso12g0663 316 PANTHER ZINC FINGER PROTEIN ZAT5 1 316 - -
Gso12g0663 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Gso12g0663 316 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Gso12g0663 316 MobiDBLite consensus disorder prediction 153 183 - -
Gso12g0663 316 MobiDBLite consensus disorder prediction 42 63 - -
Gso12g0663 316 MobiDBLite consensus disorder prediction 1 21 - -
Gso12g0663 316 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Gso12g0663 316 Gene3D Classic Zinc Finger 208 269 - -
Gso12g0663 316 Gene3D Classic Zinc Finger 110 174 - -
Gso12g0663 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0663 Gso-Chr12 6479416 6480728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0663 1 316 C2H2 Transcription Factor Family AT2G28200 40.120 7.83e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0663 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0663 - - gmx:100785286 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0663 12 6479416 6480728 Gso11g1453 11 16852925 16854306 GST
Gso12g1500 12 38316887 38318171 Gso12g0663 12 6479416 6480728 PCT
Gso11g3343 11 49217803 49219166 Gso12g0663 12 6479416 6480728 PCT
Gso12g0663 12 6479416 6480728 Gso12g1500 12 38316887 38318171 PCT
Gso12g0663 12 6479416 6480728 Gso11g3343 11 49217803 49219166 PCT