Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0659 ATGCTCGCATTGCATTTTCGCCCTTGCTTTCCTCTTCCCTTCCATCGCTCCCTAACAGTTAGGGTTTCCTCTCTCCTCTCTTTTCCTCTTTCTCTCTCCTCCGCCGTCCCTCTCCGCGCCATGTCGAAGCCCCCCTCCGCCTTCGATGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAAAAATCCCAATCCCTTTCCCAATCATCACCCTCATCCCCCAAGAAACGCAAAACCCCACCCTCCTCTTCCTCACAAAACCCTAGCGACCTCAAACCTCCTTCCCCACCCAAAACCGTTACACCTCAAGAAGGCGCCGTTAAGCCCGAACCGCTGAAGGTCCGCCACGTGTCATCTTCTTCTTTTTCGCAGGAGAAGACCGCGGAGCTTAAGAAGCAAGCTCCGCAGCTGAAGAAGAAACCCTCCGATTTCGATCCCGCTTCTATAAGTGCATGGGAGAAGGGCCAACCCGTGCCGTTTCTATTTCTCTGCTTGGCCTTCGACATGATTTCTCAAGAATCCGGAAGAATTGTCATCACTGATATTGTTTGCAATCTTCTGAGGACTGTGATGTACTCCACGCCGGAGGATCTTGTTAAGGTCGTTTACCTCTCCGCGAACCGGATTGCGCCCGCTCACGAAGGGATGGAATTGGGTATTGGCGACGCTTCCATCGTCAAGGCGCTTGCTGAGGCGTACGGAAGGACCGAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCCTCGCAGCCTATGATGTTTAAGCCCGAAGCATTGACTATTACGAAGGTTTTCAACACTTTTCGTCTTATTGCTAAGGAATCTGGGAAAGAAAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGCTATGCTGAGAAAACTCTCTTAGCTGCATTGGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCAGAGATTGTTAAACAAGTCTATTCTGTACTTCCTGACTATGACAAAATAATATCTGCACTGCTTACAGAGGGTCTATGGATGCTTCCAAAGAAATGTAATTTTACTCCTGGTGTTCCAATTGGACCTATGCTATCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGACGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGATCAGTTGAGATTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCCGCTGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTTATTCTTGATTGTGAAATTGTTGCATATGATCGTTCAACACAGAAGATCCGTTCTTTCCAGATGCTTAGTACTCGGGCTCGCAAGAATGTAGAAATTGAAGATATAACGGTTGGTGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCCGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAGAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTTCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAGTATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCACGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCTCTGAAGCTGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCCGACCTGACCATTAGCCCTGTTCACCGTGCTGCAGTGGGCATAGTAGATCCGAACAAGGGCATATCTCTACGATTTCCACGACTACTTCGAGTCAGGCCTGACAAAGCTCCTGAACAGGCCTCATCATCTGAGCAGGTTGCTGAAATGTATAAGGCTCAAAAACACAATCACACGAACAACCAAAATGACGATGAAGATGATGATTGA 2307 0.4538 MLALHFRPCFPLPFHRSLTVRVSSLLSFPLSLSSAVPLRAMSKPPSAFDALMSGARAAAAAKKKSQSLSQSSPSSPKKRKTPPSSSSQNPSDLKPPSPPKTVTPQEGAVKPEPLKVRHVSSSSFSQEKTAELKKQAPQLKKKPSDFDPASISAWEKGQPVPFLFLCLAFDMISQESGRIVITDIVCNLLRTVMYSTPEDLVKVVYLSANRIAPAHEGMELGIGDASIVKALAEAYGRTEKKGDLGLVAKESRSSQPMMFKPEALTITKVFNTFRLIAKESGKESQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEKTLLAALGQAAVYTEEHSKPPPDIQSPLEEASEIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKPTVSSFILDCEIVAYDRSTQKIRSFQMLSTRARKNVEIEDITVGVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKAYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDPNKGISLRFPRLLRVRPDKAPEQASSSEQVAEMYKAQKHNHTNNQNDDEDDD* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0659 768 Gene3D - 137 397 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso12g0659 768 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 387 605 - -
Gso12g0659 768 CDD OBF_DNA_ligase_I 607 752 - -
Gso12g0659 768 SUPERFAMILY Nucleic acid-binding proteins 607 753 IPR012340 -
Gso12g0659 768 Gene3D DNA ligase/mRNA capping enzyme 424 549 - -
Gso12g0659 768 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 143 386 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso12g0659 768 CDD Adenylation_DNA_ligase_I_Euk 384 602 - -
Gso12g0659 768 Pfam ATP dependent DNA ligase C terminal region 624 735 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gso12g0659 768 PANTHER DNA LIGASE 1 63 767 - -
Gso12g0659 768 Pfam ATP dependent DNA ligase domain 395 599 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso12g0659 768 MobiDBLite consensus disorder prediction 738 756 - -
Gso12g0659 768 Gene3D - 604 767 IPR012340 -
Gso12g0659 768 MobiDBLite consensus disorder prediction 63 91 - -
Gso12g0659 768 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 219 751 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gso12g0659 768 Pfam DNA ligase N terminus 161 328 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gso12g0659 768 ProSiteProfiles ATP-dependent DNA ligase family profile. 501 637 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso12g0659 768 MobiDBLite consensus disorder prediction 733 768 - -
Gso12g0659 768 Gene3D - 405 603 - -
Gso12g0659 768 MobiDBLite consensus disorder prediction 118 132 - -
Gso12g0659 768 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 419 427 IPR016059 GO:0003909
Gso12g0659 768 ProSitePatterns ATP-dependent DNA ligase signature 2. 573 599 IPR016059 GO:0003909
Gso12g0659 768 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 63 767 - -
Gso12g0659 768 MobiDBLite consensus disorder prediction 59 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0659 Gso-Chr12 6407958 6415731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0659 1 767 Core DNA Replication Machinery Family AT1G08130 66.248 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0659 K10747 - gmx:100783155 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0659 12 6407958 6415731 Gso11g1458 11 16908526 16915868 GST