Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0650 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAGAGGGCCATGGTCCCCAGAAGAAGACACAAAGCTGAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGACTTAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTCAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCTCAGATGAGGAAGACAGAATAATTTGCAGCCTTTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGTTTGCTTCCTCTTTCTCATCACAGAAAACAACCTTCATTTCCATCCTCTACCCTTCAAAACTCTCCACCCTCTCCTTCATCTGACCAACTTTACGGAGAGTACTGCACCTACACCCCCTTAACAACCACATCTTTCACAAGTAATATTGAACCCTTTTCCCTCCCTTCAAGTAACTACGCAAGCACAAGTACAACCTCAGTTTCTCACTCCTTTTACCAGAACCAAGACTCCATGCAACAATGCTATCACCCTACGAGAGACAACAACATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGTACTTCCTCTGACGGAAGCTGCACTCAAGGCAGAGAAATTATCAAGCAAGAAGAAATTGGTTACCACAGCTACAATAATGATTATAACTTTATGCTTAATCACAGCAACAATATTAATGATGGAGAAAAGTCATGTTTTGGTGAGTGGTTTAGCCAAACACTACTAACACCGTTGGATTATGATCTTGAGGATATTAAGCAATTGATTAGTAGCAGCAGTAGCACTGCTAGCTTCAATAATGTTGATGAAAACAAGACAGAAGAGAAGGCCATGTACTACTACTACTACTAG 948 0.4156 MGRAPCCDKASVKRGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHHRKQPSFPSSTLQNSPPSPSSDQLYGEYCTYTPLTTTSFTSNIEPFSLPSSNYASTSTTSVSHSFYQNQDSMQQCYHPTRDNNMLMFGSEGSCSTSSDGSCTQGREIIKQEEIGYHSYNNDYNFMLNHSNNINDGEKSCFGEWFSQTLLTPLDYDLEDIKQLISSSSSTASFNNVDENKTEEKAMYYYYY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0650 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso12g0650 315 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso12g0650 315 Gene3D - 70 139 - -
Gso12g0650 315 CDD SANT 16 62 IPR001005 -
Gso12g0650 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso12g0650 315 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso12g0650 315 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso12g0650 315 SMART sant 67 115 IPR001005 -
Gso12g0650 315 SMART sant 13 64 IPR001005 -
Gso12g0650 315 MobiDBLite consensus disorder prediction 127 146 - -
Gso12g0650 315 PANTHER OS09G0431300 PROTEIN 1 298 - -
Gso12g0650 315 Gene3D - 7 68 - -
Gso12g0650 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso12g0650 315 MobiDBLite consensus disorder prediction 128 146 - -
Gso12g0650 315 PANTHER TRANSCRIPTION FACTOR RAX3 1 298 - -
Gso12g0650 315 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0650 Gso-Chr12 6258596 6260871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0650 1 119 MYB Transcription Factor Family AT5G57620 89.076 9.93e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0650 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0650 K09422 - gmx:100779919 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0650 12 6258596 6260871 Gso11g1468 11 17052869 17054825 GST
Gso12g1490 12 38121263 38123326 Gso12g0650 12 6258596 6260871 PCT
Gso11g3353 11 49332378 49334266 Gso12g0650 12 6258596 6260871 PCT
Gso12g0650 12 6258596 6260871 Gso12g1490 12 38121263 38123326 PCT
Gso12g0650 12 6258596 6260871 Gso11g3353 11 49332378 49334266 PCT