Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0647 ATGGTGTCCGACGCCAGCAAGAAGAAGGCCGCACAGAAGAAGGCCGCCGCCGCCGCCAAGAGAGGTGGAAAGGCCGCCGCCGCCGCCGTTATGGAGGCGTCTTCCAAAGCCGCCAACAAGGTCGCCAACGGAATCGCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGTTCGCATCCTCTCTCCAGAGATATTCGAATAGAGTCTCTATCTGTTACGTTCCATGGGCATGATCTCATTGTTGATTCTGAATTGGAGCTAAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAATCTACACTGCTGACAGCTATTGGTTGTCGGGAACTTCCAATTCCCGATCACATGGATATATATCACCTAACCAGGGAGATTGATGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGACGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGTTTTGGCTGCACAGGATGACGGAGGTGGTGAATCCCTTGAACGCATTTATGAACGATTGGATGCCCTAGATGCTGCCACTGCAGAAAAGCGTGCTGCTGAAATCTTGCATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAGAAGACGCGTGATTTTTCCGGTGGCTGGAGAATGAGGATTGCGTTAGCACGGGCTTTATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCATATGCAAAGCAAAAAACTGAAGATCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGGTTTGGCCATGGTTCTGCAAAACTAGCTCGCCAGGCACAGAGTAAGGAGAAAACGCTGGCAAAAATGGAACGTGGTGGACTTGCAGAGAAGGTGGTCAAAGACAAAGTTTTGGTATTCCGTTTTACCGATGTTGGGAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGTCATTTGGTTATACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGACTTGATGCCTAGTGACGGCATGGTAAGGCGTCATAATCATCTTCGAATTGCACAATATCACCAGCATTTGGCCGAAAAGCTAGACATGGAAATGTCTGCTCTACAGTTTATGATTAAAGAATACCCCGGTAATGAGGAAGAGAAGATGAGGGGGGCAATTGGGAAGTTTGGGCTGTCAGGAAAAGCACAGGTGATGCCAATGAAGAACTTGTCAGATGGACAGAGGAGCCGAGTGATATTTGCTTGGTTAGCTTGGAGACAGCCTCAGATGCTTCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCGTTGGCCGAGGCATTGAATGAATGGGATGGTGGCTTGGTGCTTGTAAGCCATGATTTTAGGCTCATAAATCAAGTGGCTCATGAGATATGGGTATGTGCTAATCAATCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGCGCATCTAAAGTCAAAGGCGGGTTTATCTGACTGA 1785 0.4611 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVMEASSKAANKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLKLEKEAEVLAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVKDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQFMIKEYPGNEEEKMRGAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKSKAGLSD* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0647 594 CDD ABCF_EF-3 379 570 - -
Gso12g0647 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 308 IPR003439 GO:0005524
Gso12g0647 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 594 IPR003439 GO:0005524
Gso12g0647 594 Gene3D - 68 332 IPR027417 -
Gso12g0647 594 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 594 - -
Gso12g0647 594 SMART AAA_5 404 592 IPR003593 -
Gso12g0647 594 SMART AAA_5 92 294 IPR003593 -
Gso12g0647 594 CDD ABCF_EF-3 68 285 - -
Gso12g0647 594 Coils Coil 286 306 - -
Gso12g0647 594 PANTHER - 1 594 - -
Gso12g0647 594 Pfam ABC transporter 279 355 IPR032781 -
Gso12g0647 594 Pfam ABC transporter 395 526 IPR003439 GO:0005524
Gso12g0647 594 Pfam ABC transporter 86 240 IPR003439 GO:0005524
Gso12g0647 594 Gene3D - 343 592 IPR027417 -
Gso12g0647 594 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Gso12g0647 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 314 IPR027417 -
Gso12g0647 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0647 Gso-Chr12 6209089 6213779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0647 88 266 Calmodulin-binding Proteins AT2G36910 27.513 6.45e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0647 K06185 - gmx:100777592 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0647 12 6209089 6213779 Gso11g1473 11 17106930 17110618 GST
Gso12g1488 12 38055313 38059237 Gso12g0647 12 6209089 6213779 PCT
Gso11g3355 11 49375643 49379877 Gso12g0647 12 6209089 6213779 PCT
Gso12g0647 12 6209089 6213779 Gso12g1488 12 38055313 38059237 PCT
Gso12g0647 12 6209089 6213779 Gso11g3355 11 49375643 49379877 PCT