Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0646 ATGGCAAGGCTTAATGTAAGAAGCAGCAGCAAAAGGAGGGTTTTAGATGGTGTTTTGAAGTTGAAGAGTGTGTTTGAAAAGCTTCAGAAGAGTCTTTTATTGCGCAGAAATAAATCAAGTTCTTCCTATTATGGAGATTATGACACAACAGCGTGTGTGCTAGAAGGACATTTTGCAGTGATTGCTGAGCATGAAAAGGAGACAATAAAGAGATTCTTGGTGCCATTGAGCTACTTAAGAAACTCAACATTCTTGGGTCTATTGGAACAAGCAGCAGAAGAGTATGGGTTTGATCAACATGGTGCACTAACGATTCCTTGCAGGCCTAGTGAACTTGAGAGGTTATTATTGGCTCAGCAACGGAAAGGAAGAGAGAGATTCTTCTGA 387 0.4057 MARLNVRSSSKRRVLDGVLKLKSVFEKLQKSLLLRRNKSSSSYYGDYDTTACVLEGHFAVIAEHEKETIKRFLVPLSYLRNSTFLGLLEQAAEEYGFDQHGALTIPCRPSELERLLLAQQRKGRERFF* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0646 128 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 25 122 IPR003676 GO:0009733
Gso12g0646 128 Pfam Auxin responsive protein 27 116 IPR003676 GO:0009733
Gso12g0646 128 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 25 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0646 Gso-Chr12 6205576 6206360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0646 45 107 Calmodulin-binding Proteins AT5G20810 47.887 4.42e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0646 - K14488 gmx:102667358 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0646 12 6205576 6206360 Gso11g1474 11 17112517 17113364 GST
Gso12g1487 12 38051960 38052771 Gso12g0646 12 6205576 6206360 PCT
Gso11g3356 11 49383650 49384315 Gso12g0646 12 6205576 6206360 PCT
Gso12g0646 12 6205576 6206360 Gso12g1487 12 38051960 38052771 PCT
Gso12g0646 12 6205576 6206360 Gso11g3356 11 49383650 49384315 PCT