Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0638 ATGAGCAGCTTAAGGCCCGAATTGCATGTTGCACAACAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAACAACACTTGCAAGAGTTCTCCAACAACAACCTTGAACACTTGTCGTTACACCCAGGGTTCAACTTGGATCTCCTTCAAGTAAGAAACGTTCGAAATGGCAACATGCTTGACGAAGCTGCAGCAGCACTTTATTCATCAGAAATGATCACTTTTTCGAACCCTTTATCTGCTCCTAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGCTCAGTATGGTTCAACTTCGTTTCCTCATTCATCATCCACAAAGGAGCAACAATGTGAACCACGCAACTTAGGTGCTAGTGGGATGGTGAATTATAACGGAAGCAACCCCAACAACAACAACAGCACCTTTTACTCTTCTGAACTCAATAACAATGTTTCTAGTGAAATGGGCAATAGCGAAATCCAAATTCAGAAGCAGTTTGGTGAAATACATTACCCTCCTTCGTCATCTTCTTCGCCACCACTTTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATAATAATAATCATGGTGAATCTGTGCTTCATTATGGAAACAACGAGTTACGCTTTGGTGGTGCTAGTTTATGGACACATAATAATAGTGCATTGGGTTTCAAGAAGATCAATAATGAACAGTTACATGACACGAATCATCCTCATCAGGGTCTATCATTGTCACTCTCATCAAACTCACAACAACAATCATCCAAGCCGTGTTTTGAAGAAAGGTCTGTTGTGAAACCACCGTCCTCCCCCATGAAGCTGAATGTGCTTTCAAACAACAACAACAACACTGTTTATCGAAATGTTGGTCCTCTCGGTCCTTTCACTGGTTATGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAACTGTTAGATGAGTGGTGCTGTCAATCGGGTTCAAAATTTGCAAAGAGAGGGGTTTGTGATGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTACTTCTGCTACTGCTCTTAATGTTGATGAAAGTGCTGCTGCAAAAGGTGGTGGCAATTCGGGTGCTTCATCCTCTATGTTGTATAGTTCAATCGAAAACAATAATAATAATAATAGTAATAATAATAATAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAGATGGTTGTTCAATCATTCGAGTCAGTGGTGGGTCTTAGTTCGGCTACCCCGTACGTCTCCTTGGCTCTCAAGTCAATATCAAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTATTCAATACCAACCACAAGTACTGGTAGTAAATTTGACAACAATGTGGCCAGGCTAAGGTGCATGGACCAAAACTTTCAAAAAAACAAATCTGGCGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGGGGCTTACCAGAACGCTCCGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTTCTTCATCCTTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGCGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCGCAACAGAAGCCCACCAACACCAAACCTCTAGTAAAAATGACCAGTTAGCTTCTGCCTCTGAAGGCAGCAACAACCAGCTCAAATCTGATAACCAACCTGCTCACGAGTTTGGCGCGCATGCATTGCATTCACATGCAATCCCTGAAAAGCAATTCCAGTGTTTGGAAATGGGGTCATCTTCCTTGGCTGGCAACGAGGAACAACACATGGGAATGGAAGAAGACCAATGGAGTCAAGAGAAGAGGTCAAAACTGGAGTGCCAGATTGCTTCAACACCAAGCATGGATGGGACAGTGATGGGGTTTATGCCATATCGAAGAAGTGGACTTGAGGGTCTTGGATCAGTGTCACTCACTTTGGGTCTTAGGCATGGTGTTGAAGGTGTGCAACAACAGCATTTGCAACAAGAGGAGGAGCTTAGGCGTCAATTTGGAGGGCATATGATCCATGATTTTGTGGGCTAG 2283 0.4406 MSSLRPELHVAQQLRRDKLRIQNSSQQHLQEFSNNNLEHLSLHPGFNLDLLQVRNVRNGNMLDEAAAALYSSEMITFSNPLSAPRNPLECQELMMAQYGSTSFPHSSSTKEQQCEPRNLGASGMVNYNGSNPNNNNSTFYSSELNNNVSSEMGNSEIQIQKQFGEIHYPPSSSSSPPLYHNALQDMAYGVWGGNNNNHGESVLHYGNNELRFGGASLWTHNNSALGFKKINNEQLHDTNHPHQGLSLSLSSNSQQQSSKPCFEERSVVKPPSSPMKLNVLSNNNNNTVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSGSKFAKRGVCDVPEWVSRDVSAASTSATALNVDESAAAKGGGNSGASSSMLYSSIENNNNNNSNNNNNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVVGLSSATPYVSLALKSISKHFRCLKNAISDQLKLTCEVLGEDYSIPTTSTGSKFDNNVARLRCMDQNFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQHQTSSKNDQLASASEGSNNQLKSDNQPAHEFGAHALHSHAIPEKQFQCLEMGSSSLAGNEEQHMGMEEDQWSQEKRSKLECQIASTPSMDGTVMGFMPYRRSGLEGLGSVSLTLGLRHGVEGVQQQHLQQEEELRRQFGGHMIHDFVG* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0638 760 SUPERFAMILY Homeodomain-like 536 600 IPR009057 -
Gso12g0638 760 Gene3D - 537 599 - -
Gso12g0638 760 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 31 732 - -
Gso12g0638 760 ProSiteProfiles 'Homeobox' domain profile. 531 594 IPR001356 GO:0003677
Gso12g0638 760 MobiDBLite consensus disorder prediction 235 279 - -
Gso12g0638 760 CDD homeodomain 534 595 IPR001356 GO:0003677
Gso12g0638 760 MobiDBLite consensus disorder prediction 606 638 - -
Gso12g0638 760 SMART HOX_1 534 598 IPR001356 GO:0003677
Gso12g0638 760 Pfam Associated with HOX 304 475 IPR006563 -
Gso12g0638 760 MobiDBLite consensus disorder prediction 237 262 - -
Gso12g0638 760 MobiDBLite consensus disorder prediction 101 116 - -
Gso12g0638 760 MobiDBLite consensus disorder prediction 101 136 - -
Gso12g0638 760 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 732 - -
Gso12g0638 760 MobiDBLite consensus disorder prediction 608 638 - -
Gso12g0638 760 SMART prehox3 299 476 IPR006563 -
Gso12g0638 760 Pfam Homeobox KN domain 551 590 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0638 Gso-Chr12 6053366 6060710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0638 381 603 Homeobox Transcription Factor Family AT4G34610 51.111 2.93e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso12g0638 POX 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0638 - - gmx:100793050 1439.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0638 12 6053366 6060710 Gso11g1487 11 17303751 17311180 GST
Gso12g1479 12 37845270 37853015 Gso12g0638 12 6053366 6060710 PCT
Gso11g3363 11 49485655 49493022 Gso12g0638 12 6053366 6060710 PCT
Gso12g0638 12 6053366 6060710 Gso12g1479 12 37845270 37853015 PCT
Gso12g0638 12 6053366 6060710 Gso11g3363 11 49485655 49493022 PCT