Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0633 ATGAAGCCACAGCTCAAAATTGCTCTTGCTTTAGTTATTAGCTTGCTTTGGATTCAGCACTCATTTTGTGATGAAAATTCTGAGACATCTAGCTTAAACAAGTGGAGATGTAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTTGCTAATTGTTCAAAGTCATGTGATTGCCACTCAGGAACCGTCAGCAGGCCGGGAGGTTCAAAGAAGCATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTATATGCACAACCATGGCATTTCTTGTCTCACTTATATGCCATGTCTACCGAAAGGACAGATGTACAATTCAATCACCAATATTCTCAACAGATAAGGAAACAAGTAGTGGTAGTACCACCAACTTAATTAGTCATAGATCAGGGGCTTCTTCAGTGCCAGAAACAAAATATGCAATAAATTCTCCAATTTATCATATCACAGGTTGTTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATGGGAATATTTTTCCATTTTCATTAGCTGAACTGGAAAATGCAACAGAAAACTTTTCATCTTCCAACCTAATTGGGGTAGGGGGAAGTAGTTATGTATACCTTGGTCGGCTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGACCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTAGCTAGACTTCACCATTGTCATTTGGTTCCTTTGCTTGGATACTGCTCCGAGTTAAAAGGAAAACATGTTCAGAGATTACTAGTATTTGACTACATGGCCAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATATCGATTGGGCCACTCGTGTTATGATTGCAATAGGAGCTGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGACGTCTTTAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGCCATCCCATCCATAAATCTACAGGCAAAGAAGAAAGCCTCGTTATATGGGCTACACCTCGCTTCCAGGATAGTAGGCGAGTAATAACGGAGTTGGTTGATCCCCAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGGTAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCCGACACTCGACCAACCATGAGCGAGGTTGTTCAGATTCTTTCGAGTATTTCCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAGGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTACTAAATTTCCAACACATAGTTCAATGCCAATATATAATGATCACAATCTTTCTGTTGAGAACAAAAATAAAGCAGAAGATGCACTTTCAGCTGAGTATATGGAGAGTTTGATCCTCTTGACTTCGAAATCTGATGGCTCTTGTGCATCAGAAGAGGAAATAGTAGACCTGACTGAGCCTAGGTTTGAATCATTTTGCATCACAAATGGCAATGTCCCATGA 1725 0.4116 MKPQLKIALALVISLLWIQHSFCDENSETSSLNKWRCRCSFQGNQSYSLANCSKSCDCHSGTVSRPGGSKKHVSSKIVVVILLICVICTTMAFLVSLICHVYRKDRCTIQSPIFSTDKETSSGSTTNLISHRSGASSVPETKYAINSPIYHITGCFQKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGVGGSSYVYLGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLARLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHIDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRHPIHKSTGKEESLVIWATPRFQDSRRVITELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSRRRRNIPASLFQEPEDAQKQRQAPPTKFPTHSSMPIYNDHNLSVENKNKAEDALSAEYMESLILLTSKSDGSCASEEEIVDLTEPRFESFCITNGNVP* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0633 574 MobiDBLite consensus disorder prediction 485 508 - -
Gso12g0633 574 CDD STKc_IRAK 195 471 - -
Gso12g0633 574 ProSiteProfiles Protein kinase domain profile. 189 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0633 574 SMART serkin_6 189 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0633 574 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 61 568 - -
Gso12g0633 574 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 60 - -
Gso12g0633 574 Gene3D Phosphorylase Kinase; domain 1 164 269 - -
Gso12g0633 574 PANTHER OS01G0253100 PROTEIN 61 568 IPR045271 GO:0004714|GO:0006468
Gso12g0633 574 PANTHER OS01G0253100 PROTEIN 2 60 IPR045271 GO:0004714|GO:0006468
Gso12g0633 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Gso12g0633 574 Pfam Protein kinase domain 191 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0633 574 Gene3D Transferase(Phosphotransferase) domain 1 270 486 - -
Gso12g0633 574 SUPERFAMILY Protein kinase-like (PK-like) 169 468 IPR011009 -
Gso12g0633 574 ProSitePatterns Protein kinases ATP-binding region signature. 195 217 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0633 Gso-Chr12 5977808 5984357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0633 1 570 Receptor kinase-like Gene Family AT2G28250 50.000 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gso12g0633 Pkinase 7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0633 - - gmx:100817870 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0633 12 5977808 5984357 Gso11g1496 11 17444965 17453346 GST
Gso12g1474 12 37727103 37733095 Gso12g0633 12 5977808 5984357 PCT
Gso12g0633 12 5977808 5984357 Gso12g1474 12 37727103 37733095 PCT