Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0630 ATGGCTGCTGATTGTTCAAGATTTGTAAGATTTCAAGATGATGCTGAATTAGCAAAATTGCCAACAACAAATGGCGGCAATGGAATCAAGCCTAATGAAACACAAGTAGCTGAGACTAGCGGCAAAAAGGGTCTGAAGAAGGACACAAGGAAGTTCCTGAAGGCTAGAGTATTGTCAAGAGTATTCTCAGAGGATTATGAGAAAGTTAGAAAAAGAACATTATTAGATCCCCGGGCACAAACCATTCACCGTTGGAACAAGATTCTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCTCTATTCTTTTATTTACCACTAGTTCGAGATGAAGTATGCATCGATATTGGGACAACACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCTTGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGGGGAGATCTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACCTGATCAAGGGTTTTTGGTTAGACTTTGTTGCTGCATTGCCTCTTCCTCAGGCGTTAATTTGGATTGTCATCCCCAATCTTGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATCATTTTCCAATATTTGCCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTATAAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGGGCTGCTTACAACTTGGTGCTTTACATGTTAGCTAGCCATTTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAGGAGTGTCTGCGATATGGAGGAGCCATCTTGTCAATATGGATTCTTTGACTGCAAAAGGGTTGAAGATTCGCTCAGGGTGTCCTGGTTTATAGCAAGTAATATCACAATTTTATGCTCACCAAAGGCTAACTTCTATCAGTTTGGTATATACGGTGATGCAGTGACATCCCAAGTTACAACCTCGTCATTCTTTCATAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTCGGATTGCTGATTGGTAATATGCAGACATACCTGCAATCAACAACTGTTCGCTTAGAAGAGTGGAGGGTTAGAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTTCCTCCAGAACTAAGACAATCTGTTCGCAAATATAACCAATATAAGTGGCTGGCTACACGAGGGGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCAGCTGATCTGAGGAGAGACATCAAGCGCCACCTTTGTCTGGAACTAGTTCGACGAGTCCCATTGTTTGATCAAATGGACGAGAGAATGCTGGACGCAATCTGCGAGAGACTAAAACCTGCACTGTGCACAGAAAACACATACCTTGTTCGCGAGGGAGATCCGGTGAACGAGACCCTCTTCATAATCAGAGGCCACCTTGATTCCTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCCTGCCACATCGGCCCCGGCGATTTCTGCGGCGAGGAGCTCCTAACATGGGCCTTAGGGTCCCGTCCAAGCTTCATTCTCCCTTCCTCTACTCGCACCGTTAAGGCCATCTCAGAAGTCGAAGCCTTCGCTCTCATGGCCGAAGACCTCAAGTTCGTTGCGTCGCAGTTCCGAAGACTGCACAGCAAACAACTCAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCATGTTTCGTACAAGCTGCATGGAGGCGATACAAGAAGCGAAAGGAAGCTGCGGAACTGAGAGCGAGGGAGAATGTTCATGAGGGTGAGACAGCAGCGTATAGATCAGGGTTGGTGGTTGTGTATGCTACGAGGATGGCCAGGAAGGGTGTGCATCGTGTGCGTTCTGGAACAGATTCTGGAGTTTCTTTGCAGAAGCCAGAAGAACCGGACTTTTCTGTTGATGAGTGA 2079 0.4502 MAADCSRFVRFQDDAELAKLPTTNGGNGIKPNETQVAETSGKKGLKKDTRKFLKARVLSRVFSEDYEKVRKRTLLDPRAQTIHRWNKILLVACLVSLFVDPLFFYLPLVRDEVCIDIGTTLEVFLTMIRSMADVFYMIQILLKFRTAYVAPSSRVFGRGDLVIDSSKIATRYLIKGFWLDFVAALPLPQALIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIIKATGVVTETAWAGAAYNLVLYMLASHFLGASWYLLSIERQEACWRSVCDMEEPSCQYGFFDCKRVEDSLRVSWFIASNITILCSPKANFYQFGIYGDAVTSQVTTSSFFHKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCHIGPGDFCGEELLTWALGSRPSFILPSSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKEAAELRARENVHEGETAAYRSGLVVVYATRMARKGVHRVRSGTDSGVSLQKPEEPDFSVDE* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0630 692 SUPERFAMILY Voltage-gated potassium channels 82 399 - -
Gso12g0630 692 MobiDBLite consensus disorder prediction 25 39 - -
Gso12g0630 692 ProSiteProfiles IQ motif profile. 613 641 IPR000048 GO:0005515
Gso12g0630 692 ProSiteProfiles cAMP/cGMP binding motif profile. 477 559 IPR000595 -
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 257 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 346 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso12g0630 692 Gene3D Jelly Rolls 475 595 IPR014710 -
Gso12g0630 692 MobiDBLite consensus disorder prediction 22 42 - -
Gso12g0630 692 Gene3D - 88 401 - -
Gso12g0630 692 MobiDBLite consensus disorder prediction 672 692 - -
Gso12g0630 692 Pfam Ion transport protein 85 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso12g0630 692 Gene3D Helix hairpin bin 404 468 - -
Gso12g0630 692 PANTHER - 9 692 - -
Gso12g0630 692 SMART cnmp_10 477 608 IPR000595 -
Gso12g0630 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 692 - -
Gso12g0630 692 SUPERFAMILY cAMP-binding domain-like 407 603 IPR018490 -
Gso12g0630 692 CDD CAP_ED 477 608 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0630 Gso-Chr12 5942126 5948909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0630 51 691 Ion Channels AT2G28260 76.050 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0630 K05391 - gmx:100791992 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1473 12 37705824 37710362 Gso12g0630 12 5942126 5948909 PCT
Gso11g3369 11 49549739 49554155 Gso12g0630 12 5942126 5948909 PCT
Gso12g0630 12 5942126 5948909 Gso12g1473 12 37705824 37710362 PCT
Gso12g0630 12 5942126 5948909 Gso11g3369 11 49549739 49554155 PCT