Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0627 ATGAAGGACTGTTGGTTTTTTTACAATAATTTTAATGGTCTGTCGGATGAGAGTCTCGATGATGTGATGGACATGGAGTTTTTGGATTTGCCCCTTGACTTTGAGGATGTGGAAACTGATGCTGTGGAGGAACAAGATTGGGATGCTCAGTTCAACAAATTCCTTGAAGACCCACCCCCACCACTTGGATCATTTCCACTACAATCCTCTGAGTTCTGTGGACAAACTCAACATGAGAATGTGAAACTCGGCAAGAGCTTTCGTGCTTCTCTACCAAAGACTGTCAGACCTACATATGGCAAAACTATTCCTATCCAGAATGTCTCTTTAAAAGGAAAAGATTTGCTCCAATTCCAAACCAACAGCCCAATTTCTGTTTTTGAAAGCAGTAGTAGTTCTCCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCCGAAACAAACGCCAGCGTCTCTCAAACATCAGCCTGCTTTTCTCTATTCCTTTTATCCTTACTTCACCGACTTTTCAAAAATGTCAGAGGATGATTTTCTCCGAATCAGATTTACAAACACAGCCTGCTGGGGAATTATTGTGCATGGTCTCAAAGAAGCTGAGGAAAAAGGATATTCCCATGCTAGCTAACAGAATTGAAATGAAGAGATCCTCGTCACAGGAGTCAGTTGCACTCAGGAAATGCTTACATTGTGAGGTGACAAAGACGCCGCAATGGAGAGAGGGACCAATGGGTCCTAAGACCCTATGCAACGCCTGTGGGGTTCGATACCGATCTGGCCGGCTATTTGCTGAATACCGGCCTGCAGCTAGCCCCACTTTTGTATCATCATTGCACTCAAACTCTCACAAGAAGGTTTTAGAAATTAGGAACAGAGCCACCCAAGTGACTGTTAGATAA 915 0.4393 MKDCWFFYNNFNGLSDESLDDVMDMEFLDLPLDFEDVETDAVEEQDWDAQFNKFLEDPPPPLGSFPLQSSEFCGQTQHENVKLGKSFRASLPKTVRPTYGKTIPIQNVSLKGKDLLQFQTNSPISVFESSSSSPSVENSNFELPVIPTKRPRNKRQRLSNISLLFSIPFILTSPTFQKCQRMIFSESDLQTQPAGELLCMVSKKLRKKDIPMLANRIEMKRSSSQESVALRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVSSLHSNSHKKVLEIRNRATQVTVR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0627 304 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Gso12g0627 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 288 - -
Gso12g0627 304 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Gso12g0627 304 Gene3D - 229 277 IPR013088 GO:0006355|GO:0008270
Gso12g0627 304 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 25 298 - -
Gso12g0627 304 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Gso12g0627 304 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Gso12g0627 304 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Gso12g0627 304 PANTHER GATA TRANSCRIPTION FACTOR 25 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0627 Gso-Chr12 5893999 5900266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0627 9 297 C2C2-Gata Transcription Factor Family AT1G08010 35.932 5.84e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso12g0627 GATA 6.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0627 - - gmx:100815208 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0627 12 5893999 5900266 Gso11g1502 11 17520332 17525227 GST
Gso12g1467 12 37585895 37590537 Gso12g0627 12 5893999 5900266 PCT
Gso11g3374 11 49612563 49617017 Gso12g0627 12 5893999 5900266 PCT
Gso12g0627 12 5893999 5900266 Gso12g1467 12 37585895 37590537 PCT
Gso12g0627 12 5893999 5900266 Gso11g3374 11 49612563 49617017 PCT