Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0626 ATGAAGGAAGGTGAAAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCGCAAATGAACTCCAAAGTCTTCTACTTCCCACAGGGTCACGCCGAACACGCCCACACCAACATTCATCTGAGGCTTCCACCATTCATTTTATGCAACGTTGAAGCAGTTAAGTTCATGGCGAACCCAGAAACCGACGAAGTGTTCGCGAAGCTGAGTTTGCTTCCTCTCAGAAACTCGGAACTCGGTGCTGACTCGGACGGTGCTGGTGGTGATGACGTGGCAGAACCTTCTTGTTGTGAAAAGCCTGCGTCTTTCGCTAAGACTCTGACTCAGAGCGACGCCAACAATGGTGGGGGGTTTTCGGTTCCGCGGTACTGCGCGGAGACAATTTTCCCGCGTCTGGACTACACGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAAGACGTGCACGGCGAGACCTGGAGGTTCCGGCACATCTACCGAGGGACGCCACGTAGGCACTTGCTGACCACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCTGGGGATTCCGTTGTGTTTCTGAGGGCTGAGAATGGTGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTAGCGAGGGTTCAGGTTCAGGTTCATCATCTGTGTGGAGTTCAGCTTCTGGGTCTGGAAATGGAAATTGTGGGATTGGGCCTTATGGGCCTTTTTCTTTTTTCTTGAAAGAAGAAAACAAAATGTTAAGGAATGGTTGTGGTGGGAATTTGAGTGGAAGGGTGAAAGTGAGGGCTGAGGATGTTGTTGAAGCTGTGACTCTTGCTGCTAGTAATAAGCCTTTTGAGGTTGTGTATTACCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCAAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATCCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGCTTGTTGAGTTGGTATCTAACATTCCACTCATCAATTTCACACCCTTCTCTCCACCAAGAAAGAAGCTGCGGCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCAATGTTTTCAGGCAACCAGCTTGGGCCTAACAGCCCCTTGTGTGGTTTTTCGGATAATGCTCCTGCAGGGATACAGGGAGCCAGGCATGCTCAATTTGGAAAATCTCTATCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGATGCTTCCAACTAATATCCATCAACTTGGAGTGTATAATGAGATTTCAAATGGTAACATGATGACCAACCATGATAAGAGCAAAGAAAGTTTATCATGCTTTCTGACCATGGGGAAATCTACCAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAGTTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATTTCTAGCTGTTCTGGAGATGTGTTGTCTCACCGAAAAAGATCGGTAAGTGATGATAAGGACAAAGCGAAGTGCCTTATGGATGACTCGCAATCTACACTCTCACAGCAGTTTTCACCAGGAAAAGCATCTTCTGCTGAGTTCTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAAGTTTTCTTGGAGTCGGAAGATGTAGGAAGGACCCTAGACCTATCGCTGTTTGGTTCTTATGAAGATCTGTATAGGAGACTTGCCATCATGTTTGGGATTGAAAGGTCTGAGATTTTGAACCATGTGCTCTACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAACATTAAAAGGGCCTTTATTACAGGAACTCGTAATGGTGAACATGGACTAGATGCATCAAACAAAACAGGCCCTCTGAGCATATTTGCTTAA 2106 0.4715 MKEGEKVLDPQLWHACAGGMVQMPQMNSKVFYFPQGHAEHAHTNIHLRLPPFILCNVEAVKFMANPETDEVFAKLSLLPLRNSELGADSDGAGGDDVAEPSCCEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGISEGSGSGSSSVWSSASGSGNGNCGIGPYGPFSFFLKEENKMLRNGCGGNLSGRVKVRAEDVVEAVTLAASNKPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPLINFTPFSPPRKKLRPQHPDFPLDVQFPIPMFSGNQLGPNSPLCGFSDNAPAGIQGARHAQFGKSLSDLHLNNKLQLGMLPTNIHQLGVYNEISNGNMMTNHDKSKESLSCFLTMGKSTKSLEKSDDVKKHQFLLFGQPILTEQQISSCSGDVLSHRKRSVSDDKDKAKCLMDDSQSTLSQQFSPGKASSAEFSWQLGLDTGHCKVFLESEDVGRTLDLSLFGSYEDLYRRLAIMFGIERSEILNHVLYHDAAGAAKKTGEEPFSDFMKTAKRLTILTDSGSKNIKRAFITGTRNGEHGLDASNKTGPLSIFA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0626 701 Gene3D - 588 674 - -
Gso12g0626 701 Gene3D - 107 211 IPR015300 -
Gso12g0626 701 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Gso12g0626 701 SUPERFAMILY DNA-binding pseudobarrel domain 105 210 IPR015300 -
Gso12g0626 701 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso12g0626 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
Gso12g0626 701 PANTHER AUXIN RESPONSE FACTOR 2 678 - -
Gso12g0626 701 Gene3D - 316 388 - -
Gso12g0626 701 SMART B3_2 109 211 IPR003340 GO:0003677
Gso12g0626 701 CDD B3_DNA 108 209 IPR003340 GO:0003677
Gso12g0626 701 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Gso12g0626 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0626 Gso-Chr12 5876871 5880646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0626 1 673 B3 DNA Binding Superfamily AT4G30080 58.746 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso12g0626 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0626 - - gmx:100814686 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0626 12 5876871 5880646 Gso11g1503 11 17542309 17545746 GST
Gso12g1466 12 37573872 37577312 Gso12g0626 12 5876871 5880646 PCT
Gso11g3375 11 49624613 49627694 Gso12g0626 12 5876871 5880646 PCT
Gso12g0626 12 5876871 5880646 Gso12g1466 12 37573872 37577312 PCT
Gso12g0626 12 5876871 5880646 Gso11g3375 11 49624613 49627694 PCT