Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0619 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGGAGAGTACTCTGCCAAAGACTACCATGACCCTCCTCCAGCACCTTTGTTCGACCCAGAGGAGCTCACACAGTGGTCCTTCTATAGAGCCCTCATCGCTGAGTTCATAGCAACCCTTCTCTTCCTTTATGTTACTGTGCTCACCATTATTGGCTACAAAAGGCAGACTGATACAACGGTAGGTGGCACCGAGTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGGAGGACACATAAACCCGGCGGTGACATTCGGGTTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATGGTGGCACAGTGTGCCGGTGCTATCTGTGGTACTGGATTGGCCAAGGGGTTCCAAAAAGCATACTACAACAGGTATGGAGGTGGTGCCAACTCTGTTGCTGATGGCTACAACAATGGTACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTGTACTGGCGCCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAGCAGCTGTAATCTACAACGAAGACAAAATCTGGGATGATCAGTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTTTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCAGGAGCAACGCTTAA 861 0.4936 MAKDVEVQEQGGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDTTVGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYNNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNEDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0619 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Gso12g0619 286 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Gso12g0619 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Gso12g0619 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso12g0619 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Gso12g0619 286 PANTHER AQUAPORIN PIP2-7 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0619 Gso-Chr12 5782234 5784628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0619 1 286 Major Intrinsic Protein MIP AT2G37170 80.420 9.09e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0619 K09872 - gmx:100811119 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0619 12 5782234 5784628 Gso11g1511 11 17647653 17649907 GST
Gso12g1449 12 37328181 37329837 Gso12g0619 12 5782234 5784628 PCT
Gso11g3380 11 49698522 49700184 Gso12g0619 12 5782234 5784628 PCT
Gso12g0619 12 5782234 5784628 Gso12g1449 12 37328181 37329837 PCT
Gso12g0619 12 5782234 5784628 Gso11g3380 11 49698522 49700184 PCT