Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0611 ATGAGGGATTGCAGAGAAATTTGCTTGTTCATCTGTGTCTTATCAATCTTGCCCTTGGTATGTTTTTCTGCCAACTTTGTTCCTACAGATAATTACCTTATAGACTGTGGATCACCAACCAATACTCCAATAGATAGCCGCAATTTCACAGCGGATAGTTTCTATAAGAATTTCCTTTCCACACAACAAGATATTGTTGCCAGTACCTCCTTGAAATCAATCACTTCCACCAGTGATTCGCCTCTCTATTCAACAGCTAGAATTTTCACTGCACCCTCAAAGTACACTTTTCCTATTAACAAAAAGGGGAGACATTGGATCCGTCTTTATTTCTTTCCATTTGCATATGAGAAGTACAATTTGAGTGCTGCGAAATTTGCTGTTTCCACCCAGAACTATAATCTTCTCAGTGACTTTAGTGTGCAGAAAAATCCTGTTATGAAGGAGTACTCTCTAAATGTGACCTCAGACACCCTTGTGATCACCTTTTCCCCTTCCGACAATTCCATTGCTTTCGTGAATGCCATTGAAGTTGTTTCGGTCCCTGATGACCTCATTATTGATGATGCTAACACCCTAAATCCAGCAGGAAGCTACTCTGGCTTGTTTGCACAGGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAACCATCTCCTCCGGCAGTGACACACTTCAACGAACTTGGGTTCCTGATGAGAAATTCCTTATACAACCTAACTTGGCCCGTAATTTTACAAATATAGGTGCTGTGAAATATGTAGATGGTGGGCCAACAGAAAATACTGCTCCACCTTCTGTTTATGGTACTCTAACACAGATGAATTCAGCCGATGATCCCCGAAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATAATCAGCAAAAGTCTCAATGAACTGTACTTCAATGTTTACATTAACTCCTGGTTTGTTGCCAAGGATCTTGATCTTAGTACAATAAATAATAATATTTTGGCTGCTCCGTTTTTTAAGGATATGATTACAGCCCCATCTGCCAGCACCAAAATTTTCATAAGCATAGGCCCTTCTACTGTGAATAGCAATTATCCTAATGCTATTTTGAATGGGCTGGAAATAATGAAAATGAACAACTCTGTGAGTAGTCTCAGCTCATCAACAGCTGTGCCTTTGTCTAGTACTTCTGGTTCAGGTTCTAAGAAAGTTGGCTTGATAGTGGGTGTGAGTGTTGGGGCATTTCTTGCAGTGGTCATTGTTGGAGTTTTCTTTTTTCTACTATGCAGGAAAAGAAAACGTTTGGAAAAAGAAGGGCATTCGAAGACATGGGTTCCCTTATCAATCAATGATGGAACTTCTCACACCATGGGAAGTAAATATTCTAATGCCACAACAGGAAGTGCTGCTTCAAACTTTGGGTATCGCTTCCCTTTTGTGACAGTTCAGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGCATTGGTGGTTTTGGTAAAGTATACAAGGGAGAGTTAAATGATGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCTCAGCAGGGGCTTGCGGAGTTCCGAACTGAAATTGAGATGCTCTCTCAGTTCCGCCACCGCCATCTAGTATCATTGATTGGATATTGTGATGAAAGGAATGAGATGATATTGATATATGAATATATGGAGAAGGGAACTCTCAAAAGCCATTTGTATGGTTCAGGTTTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATATGCATTGGAGCAGCCAGAGGACTGCATTACCTTCACACTGGCTATGCTAAGGCCGTTATTCACCGTGATGTGAAATCTGCAAATATCCTGCTTGATGAAAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCGAAGACTGGGCCTGAAATTGATCAGACACATGTGAGCACAGCTGTCAAAGGGAGTTTTGGGTACCTTGATCCCGAGTATTTCAGGAGGCAACAGCTTACGGAAAAGTCAGATGTGTATTCATTTGGGGTGGTTCTGTTTGAGGTTCTTTGTGCTAGACCTGTTATCGATCCAACCCTTCCTAGAGAAATGGTGAACTTGGCTGAATGGAGCATGAAATTGCAGAAAAGAGGGCAATTGGAGCAAATAATAGATCCAACACTTGCTGGGAAAATCAGACCAGATTCTCTTAGGAAGTTTGGAGAAACGGCTGAAAAATGTTTGGCTGACTTTGGTGTTGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCGGTTGTTCAAGGTGATCCTGAAGAAAATAGTACAAACATGATTGGTGAACTCTCTCCACAGGTCAACAATTTCAACCATGAAGTAAGTGTTTCTGCTGCACAATTTGAAGCTACAAGTCTGGATGATCTGTCTGGTGTATCAATGAGTAGGGTATTCTCACAGCTGGTGAAGTCTGAAGGGAGGTGA 2514 0.4181 MRDCREICLFICVLSILPLVCFSANFVPTDNYLIDCGSPTNTPIDSRNFTADSFYKNFLSTQQDIVASTSLKSITSTSDSPLYSTARIFTAPSKYTFPINKKGRHWIRLYFFPFAYEKYNLSAAKFAVSTQNYNLLSDFSVQKNPVMKEYSLNVTSDTLVITFSPSDNSIAFVNAIEVVSVPDDLIIDDANTLNPAGSYSGLFAQALETVFRVNMGGPTISSGSDTLQRTWVPDEKFLIQPNLARNFTNIGAVKYVDGGPTENTAPPSVYGTLTQMNSADDPRSNFNVTWQFDVEPQFQYLVRLHFCDIISKSLNELYFNVYINSWFVAKDLDLSTINNNILAAPFFKDMITAPSASTKIFISIGPSTVNSNYPNAILNGLEIMKMNNSVSSLSSSTAVPLSSTSGSGSKKVGLIVGVSVGAFLAVVIVGVFFFLLCRKRKRLEKEGHSKTWVPLSINDGTSHTMGSKYSNATTGSAASNFGYRFPFVTVQEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKSHLYGSGFPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWSMKLQKRGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNHEVSVSAAQFEATSLDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0611 837 Gene3D - 205 388 - -
Gso12g0611 837 Gene3D - 31 182 - -
Gso12g0611 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0611 837 Pfam Malectin-like domain 34 386 IPR024788 -
Gso12g0611 837 Gene3D Phosphorylase Kinase; domain 1 459 572 - -
Gso12g0611 837 SUPERFAMILY Protein kinase-like (PK-like) 476 768 IPR011009 -
Gso12g0611 837 PANTHER OS07G0166700 PROTEIN 19 828 IPR045272 GO:0004714|GO:0006468
Gso12g0611 837 Pfam Protein tyrosine and serine/threonine kinase 502 697 IPR001245 GO:0004672|GO:0006468
Gso12g0611 837 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Gso12g0611 837 CDD STKc_IRAK 503 768 - -
Gso12g0611 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 828 - -
Gso12g0611 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Gso12g0611 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0611 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0611 Gso-Chr12 5661138 5665021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0611 10 837 Receptor kinase-like Gene Family AT3G46290 65.988 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso12g0611 Malectin_like 6.6e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0611 - - gmx:100806488 1655.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0611 12 5661138 5665021 Gso11g1230 11 11182170 11185379 GST
Gso15g0375 15 3385050 3388633 Gso12g0611 12 5661138 5665021 PCT
Gso11g3429 11 50240706 50244519 Gso12g0611 12 5661138 5665021 PCT
Gso12g0611 12 5661138 5665021 Gso15g0375 15 3385050 3388633 PCT
Gso12g0611 12 5661138 5665021 Gso11g3429 11 50240706 50244519 PCT