Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0609 ATGTACACACACCGCAACGCCTCACTCTCACGCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCCCCGGACGCATCCGCGGCGTCACCAATGCAGTACTCTCCCGCCGCCGCCGCCGCCGCCGCCGCTCCTCCTCCCCTTCACCACCACCACCACGGCGAGTTCGACTCGCTGCTCGAACTCAATTACTCGGAGATGAGTTCGAACAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGACGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAAAAGAACGGTGGGACCCACCACCATCCCTTTTCTGAGTTCTCTCCTCTTTTCGCTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATAGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTACTGCAAGAAAATTAAGTATGCTTGCAGAAAGACATTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGGCGAAATTGCAATTAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGAAGAAGAGGAAGAGAATTGGGCTAATTTCTTTGATTCCTTAGTTCCTCCAAATCTTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAA 843 0.5196 MYTHRNASLSRAADSLGHFLSPPDASAASPMQYSPAAAAAAAAPPPLHHHHHGEFDSLLELNYSEMSSNNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGGTHHHPFSEFSPLFAEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNYCKKIKYACRKTLADSRPRIRGRFARNGEIAINPPAQWSHMGNGEEEEEEEENWANFFDSLVPPNLAQEPQGSSSSFGVFY* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0609 280 ProSiteProfiles CCT domain profile. 184 226 IPR010402 GO:0005515
Gso12g0609 280 Pfam CCT motif 186 226 IPR010402 GO:0005515
Gso12g0609 280 MobiDBLite consensus disorder prediction 265 280 - -
Gso12g0609 280 PANTHER CCT MOTIF PROTEIN 56 280 - -
Gso12g0609 280 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 56 280 IPR045281 GO:0009909
Gso12g0609 280 MobiDBLite consensus disorder prediction 233 252 - -
Gso12g0609 280 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0609 Gso-Chr12 5634475 5637661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0609 175 225 C2C2-CO-like Transcription Factor Family AT5G24930 49.020 6.88e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g0609 CCT 3.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0609 - - gmx:102667610 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0609 12 5634475 5637661 Gso11g1232 11 11193856 11196975 GST
Gso11g3426 11 50221357 50224032 Gso12g0609 12 5634475 5637661 PCT
Gso12g0609 12 5634475 5637661 Gso11g3426 11 50221357 50224032 PCT