Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0606 ATGGAGGCGTTTCCAAGAGACCAACGAGGTTCGCTCGAAGTGTTCAACCCTTCTTCTTCTTACTCCACCGAGAAGTCGGTGAACTCGCCTGTGCGTGTTCAATCCACGTGGAAGACGTGGATTGACGAGTTACCGGAACAACAACAACAACAACAATGTGGTGGTACTAACGAGGTGACCGCCACGTCATGGATGGCGCTTAAGGACTCCGCTCCTCCACCGCCGACGCTCGCCGCAGTGCTGGGCGAGTCTCTGTCAGCGGCGGTGGGGGAGGTTGGCAACGCCGCGAAGCGCGCGGCGGAGTGGGGCCTGGTGCTGAAGACGGACACGGAGACCGGGAAGCCGCAGGGAGTGAAGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGCGGGTCGAGGAGGGACTCGAGCAACTCGGTTCGGAGCTCCGGCGAGTCTTCCGACGACGGGAGGGAGTACCGGGGAGGAATACCGAGGGTTTCGGAGGACCTGAGGGACGCTTTGTCGGCGTTTCAACAGACGTTCGTGGTTTCGGACGCTACCAAACCCGATTACCCGATCATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGCTATACATCAAAGGAGGTCATAGGGAGAAACTGTCGGTTTATGCAGGGGGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCTTTACAAAGTGGGTCTACTTACTGTGGAAGGTTACTCAATTACAAGAAGGATGGCACCCCCTTTTGGAACCTTCTCACTATTGCCCCTATCAAGGACGACGATGGAAGAGTCCTCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGGCTAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATACGATGCTCGTCAGAAAGAGAAGGCAAATAGTACAGTATCTGAGTTGTTGCTGGCTGTGAGGAGGCCTCGTGCACTGAGTGAATCAGCAGGGCGTCCCATGATCAGAAAGTCAGCATCCGGTGATGATGCACAAGACAAACCGCCAGAAAAGTCATCTAGGAGAAAATCTGAGAGTGTCGCTTCTTTTAGACGAAAATCACATGCTGGAGACAGAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGAGCTCTCGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGCCAGTCTAACTTTGAAAGCTTCAATGATGAAGCAGTTGTAGAGAACAGCTCTGAGAGTAGTGATGAGGATGATGAGAGGCCTGAAAGTTTTGATGGCAAAGTACAGAAGAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTCATCACTGATCCAAGGCTGCCGGACAACCCCATTATTTTTGCATCTGATAGCTTCCTGGAGCTTACAGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTTTGCAAGGCCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACAATCAAACTGACGTTACCGTGCAGCTTATTAATTATACGAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGGGAGAGGTACAATATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTGGAGCCACTTCACAACCGCATTGCTGACGATACTGCAAAAGAGGGAGAACAATTGGTAAAAGATACTGCGGAAAATGTTGATGATGCACTGAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAGCCTCATAGGAGGGATGAAGCTGCTTGGAAAGCCATTCAGCAGATCCTAAATAGTGGAGAGCAGATAGGCCTGAATCATTTTAGGCCAGTTAAACCCTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGCGAAACTGGTCATTATTTTGCCATGAAGGCAATGGAGAAGGGTGTTATGATCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATACTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACGAAGACACATGTTTGCTTGATAACTGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTTGCGTTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGCTTCTAGTTCCAGCTATAAATGAAAAGAAGAAAGCTCAGAAAGGCCCACACGCTCCAATATTTATGGCTGAACCTATGAGAGCATCCAATTCTTTTGTGGGGACTGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACAAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTTTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAGAACCATCCGTTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCCTCGAGACAACTGAAGGAGGAGAAAAGGAAGCCAAATTTGAAAATCAAGTGCAAGAGGACATGAACGTCTTCTAA 2934 0.4717 MEAFPRDQRGSLEVFNPSSSYSTEKSVNSPVRVQSTWKTWIDELPEQQQQQQCGGTNEVTATSWMALKDSAPPPPTLAAVLGESLSAAVGEVGNAAKRAAEWGLVLKTDTETGKPQGVKVRTSGGEEPSAKVTGGSRRDSSNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDVAKIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDDGRVLKFIGMQVEVSKHTEGAKEKMLRPNGLPESLIRYDARQKEKANSTVSELLLAVRRPRALSESAGRPMIRKSASGDDAQDKPPEKSSRRKSESVASFRRKSHAGDRSSMERITELPEKKHKSSRRRSFMGFIRKSQSNFESFNDEAVVENSSESSDEDDERPESFDGKVQKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIADDTAKEGEQLVKDTAENVDDALRELPDANMKPEDLWMNHSKVVHPKPHRRDEAAWKAIQQILNSGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGHYFAMKAMEKGVMINRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPAINEKKKAQKGPHAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLLETTEGGEKEAKFENQVQEDMNVF* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0606 977 SMART serkin_6 646 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0606 977 TIGRFAM sensory_box: PAS domain S-box protein 191 285 IPR000014 -
Gso12g0606 977 TIGRFAM sensory_box: PAS domain S-box protein 470 560 IPR000014 -
Gso12g0606 977 Gene3D PAS domain 434 598 - -
Gso12g0606 977 CDD STKc_phototropin_like 645 952 - -
Gso12g0606 977 ProSiteProfiles PAC domain profile. 238 292 IPR000700 -
Gso12g0606 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 185 277 IPR035965 -
Gso12g0606 977 SUPERFAMILY Protein kinase-like (PK-like) 629 952 IPR011009 -
Gso12g0606 977 ProSitePatterns Protein kinases ATP-binding region signature. 652 675 IPR017441 GO:0005524
Gso12g0606 977 MobiDBLite consensus disorder prediction 330 395 - -
Gso12g0606 977 MobiDBLite consensus disorder prediction 342 390 - -
Gso12g0606 977 MobiDBLite consensus disorder prediction 107 161 - -
Gso12g0606 977 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Gso12g0606 977 MobiDBLite consensus disorder prediction 12 28 - -
Gso12g0606 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 461 560 IPR035965 -
Gso12g0606 977 SMART pas_2 447 516 IPR000014 -
Gso12g0606 977 SMART pas_2 166 236 IPR000014 -
Gso12g0606 977 MobiDBLite consensus disorder prediction 1 28 - -
Gso12g0606 977 Gene3D Transferase(Phosphotransferase) domain 1 730 945 - -
Gso12g0606 977 CDD PAS 460 560 IPR000014 -
Gso12g0606 977 PANTHER PHOTOTROPIN-1 112 974 - -
Gso12g0606 977 CDD PAS 191 280 IPR000014 -
Gso12g0606 977 Gene3D PAS domain 178 335 - -
Gso12g0606 977 PANTHER FLIPPASE KINASE 1-RELATED 112 974 - -
Gso12g0606 977 ProSiteProfiles PAS repeat profile. 445 518 IPR000014 -
Gso12g0606 977 Pfam PAS domain 185 281 IPR000014 -
Gso12g0606 977 Pfam PAS domain 468 560 IPR000014 -
Gso12g0606 977 ProSiteProfiles Protein kinase domain profile. 646 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0606 977 ProSiteProfiles PAC domain profile. 519 573 IPR000700 -
Gso12g0606 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Gso12g0606 977 SMART pac_2 522 564 IPR001610 -
Gso12g0606 977 SMART pac_2 241 283 IPR001610 -
Gso12g0606 977 Pfam Protein kinase domain 649 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0606 977 MobiDBLite consensus disorder prediction 412 441 - -
Gso12g0606 977 MobiDBLite consensus disorder prediction 134 148 - -
Gso12g0606 977 ProSiteProfiles PAS repeat profile. 164 235 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0606 Gso-Chr12 5577873 5598319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0606 3 962 AGC Kinase Gene Family AT3G45780 70.163 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso12g0606 Pkinase 4.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0606 K20715 - gmx:100804524 1913.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0606 12 5577873 5598319 Gso11g1539 11 17916650 17920332 GST
Gso15g0380 15 3426012 3441150 Gso12g0606 12 5577873 5598319 PCT
Gso11g3422 11 50156780 50171722 Gso12g0606 12 5577873 5598319 PCT
Gso12g0606 12 5577873 5598319 Gso15g0380 15 3426012 3441150 PCT
Gso12g0606 12 5577873 5598319 Gso11g3422 11 50156780 50171722 PCT