Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0605 ATGGGTTGGTTTTGTTGCCCAGGGAAATCAAGCAAAAAATCGGTTACCGAAGACTACAGCGACACCCTCAACCAGAAACCCATCAATTTCACTGCCACAGATAGTGTCAAAGTTGATTTCAGAGTGAATGGGAATAAGGAAGATGGTTCTAAAGGTGATCAACTTGCTCTGGACGTAAAGAGTTTAAATTTGAAAGAGGAGGCTTCTCAGGATAGAAAAGATAATGGTAATCGGGCACAGACATTCAGTTTTAATGAACTTGAAGCTGCGACGGGAAGTTTTAGGTTGGATTGTTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAACGGACTTCAAGGGATTCGTGAATTTGTTGTTGAAGTGTTGACGTTGAGTTTGGCAGATCACCCTAACCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCATTAGGATCTTTGGAGGACCATTTGCTTGATATTCGGCCAGGTAGAAAACCACTTGATTGGAACACAAGAATGAAAATAGCAGCTGGTGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTAATATATCGCGATTTGAAATGTTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAATTGTCCGATTTTGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGCGCCCCAGATTATGCAATGACAGGCCAGTTGACATTCAAGTCAGATATTTACAGCTTCGGGGTTGTTCTTTTGGAGCTTATTACAGGCCGGAAAGCCATTGACCATACAAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGATAGGAGAAAATTTTCGCAAATGGTTGACCCATTACTTGAAGGTCAATATCCCGTGAGAGGCCTATACCAAGCTCTTGCCATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTAATAGTTGACGTGGTTACAGCTCTAAATTACCTAGCTTCTCAGAAGTATGATCCCCAACTTCATCCAGCACAAACTTCTAGAAGGAGTCCACCTTCTCAGATGATGAAAAGGGATGATGATGATCATAGACATATTTTAAGCATCGAGCATGAGACAGACAGATCTTAA 1248 0.4239 MGWFCCPGKSSKKSVTEDYSDTLNQKPINFTATDSVKVDFRVNGNKEDGSKGDQLALDVKSLNLKEEASQDRKDNGNRAQTFSFNELEAATGSFRLDCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLEDHLLDIRPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQLHPAQTSRRSPPSQMMKRDDDDHRHILSIEHETDRS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0605 415 MobiDBLite consensus disorder prediction 379 415 - -
Gso12g0605 415 MobiDBLite consensus disorder prediction 392 415 - -
Gso12g0605 415 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0605 415 PANTHER OS07G0668900 PROTEIN 1 401 - -
Gso12g0605 415 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0605 415 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Gso12g0605 415 SUPERFAMILY Protein kinase-like (PK-like) 80 392 IPR011009 -
Gso12g0605 415 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 401 - -
Gso12g0605 415 CDD STKc_IRAK 100 369 - -
Gso12g0605 415 Pfam Protein kinase domain 99 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0605 415 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Gso12g0605 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Gso12g0605 415 PIRSF ILK 85 380 - -
Gso12g0605 415 PIRSF ILK 29 91 - -
Gso12g0605 415 Gene3D Phosphorylase Kinase; domain 1 63 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0605 Gso-Chr12 5568127 5572595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0605 60 373 Glycoside Hydrolase AT3G07070 62.975 5.26e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso12g0605 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0605 - - gmx:100804000 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0605 12 5568127 5572595 Gso11g1238 11 11271725 11276405 GST
Gso15g0382 15 3449465 3453165 Gso12g0605 12 5568127 5572595 PCT
Gso11g3420 11 50145133 50148902 Gso12g0605 12 5568127 5572595 PCT
Gso12g0605 12 5568127 5572595 Gso15g0382 15 3449465 3453165 PCT
Gso12g0605 12 5568127 5572595 Gso11g3420 11 50145133 50148902 PCT