Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0604 ATGAACAATAATGTTGGGAAAGGGAAAAAAGGTTTGGCAGAACAAAATCATATGTTTTTTGACAAAAAGAGTCTCGAAAATGGAGTAGTTAATGGAGGGGTAGCCTCTGGATCATCAACTGAAGATGACACAAGATTTAATAAGGTGGTTGAAGATGGAAACAATGGATTGAGGGGTCTGATTCAAATCCATGGGAGCTTGCAGATTTCACAACAACCACCTCAAGAGCCAGCCGTATGCTGGGAGAGATTTCTCCCATTAAGATCGATAAAAGTTTTGCTGGTGGAAGATGATGATTCGACACGCCATGTTGTGCGTGCTCTGTTACAGAATTGTAGTTACAAAGTCACTGCCGTTTCCAATGGCCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCCTCACCAGAAAATTTGCAAAGTCAAGAAGTAATGATGCATATGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGCATTCGTGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAGTTGGTTGATGCCCCTGATAGCACATGTGCCCAAGTGATGCAAACAAAGACTGAAAAAGTTAGTGGTAGATGGGTGCATGCGACGGAAAAAGAGTGCCATGAACTTATTGATCTTGATGATGTTGCAAGGGTTAAGGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACTCGAGGAACTGTCTAGCAATCCAATTGTGGGTAAAGGGGCAAATAAGATGTCTGATGTAGATGATATGCAGATCATTAAGAGAAAGAGCAATGTCTGTGAAAAAGGACAATTGGAATACAATGGTGATAAAACCGGGACACAGGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACAATCAAAAGCAAACTGTTGCCCCAAAGAGCATCCATCCCTTGAACTAACTCTGAAAAGGCTGGGAGAAGTAGGAGATGCTAAAAATGTCACTGGTGAAGAATGCAATGTCTTGAGACATTCAGATCAGTCAGCATTCTCAAAATATAATACTGTTTCTGCTAACCAGGCTCAAACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGCTCAGCTGCACCAAATACAGAGACAATGCACAACTTTCCATCTCATTCAAATGGCACTCCTTCAAATCAAAAATCTAATGGGAGCAACAACATCAATGACAGGGCCTCCACTAATACATATCTTGGCACCAAACCTGATACTTTTGACAAGAAGCCGGAGTCTGGAAGAGGGATTGGCTCGTATAATTCTTGTGAACTCCTAACTGTGCAGAACAATAGCATTTCTTCATCTCAGAAGAAAACTTCTGCCTGGGAAGAATATACAGAAATCATTAAAGAATCAGTAGGAGGCTCTGAACAAGGATTCCAAGTCGAGCACACTTACTATCAGCTTCACCATTATAATCACATTGCCCATAAAGCTGCAGTAGATCCCCAATCAGATCATGATCTCTTACTGAAAAGCTCAACTCCGCAATGTGTATCATCAAATGCATTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTATAGTGTGGATGGAAATGCAGTGGAGAGTGATCATGGGAGCAATAATGGACAGGATGGAAGCAACAACTTGACAATCAGAACGATAAATGTGGAAAACGGAAATGTGGCTGCTGGGAGCATTGGAATTGGTGGCATTGATAGGAAAAGCATTGGGAACGGGACAGATGAAGTACGGCTTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGCCTAAAGAGAAAAGAAAGATGCTTTGAGAAGAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAGGGACAATTTGTCAGACGAATAGTGTCTGAAGGCAAAGAAGAAAAAGATAAACAAAGTGACAACCTGGTGCCTGGGGACAATTCTATCGACATTCCTCAATAA 2370 0.4177 MNNNVGKGKKGLAEQNHMFFDKKSLENGVVNGGVASGSSTEDDTRFNKVVEDGNNGLRGLIQIHGSLQISQQPPQEPAVCWERFLPLRSIKVLLVEDDDSTRHVVRALLQNCSYKVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATLTRKFAKSRSNDAYENNSDSSDENDYGSRGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSGRWVHATEKECHELIDLDDVARVKDLAMGISLNMQLEHPLEELSSNPIVGKGANKMSDVDDMQIIKRKSNVCEKGQLEYNGDKTGTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSQSKANCCPKEHPSLELTLKRLGEVGDAKNVTGEECNVLRHSDQSAFSKYNTVSANQAQTGNVGSCSPLDNSSAAPNTETMHNFPSHSNGTPSNQKSNGSNNINDRASTNTYLGTKPDTFDKKPESGRGIGSYNSCELLTVQNNSISSSQKKTSAWEEYTEIIKESVGGSEQGFQVEHTYYQLHHYNHIAHKAAVDPQSDHDLLLKSSTPQCVSSNAFGGPAESNAANYSVDGNAVESDHGSNNGQDGSNNLTIRTINVENGNVAAGSIGIGGIDRKSIGNGTDEVRLALREAALTKFRLKRKERCFEKRVRYHSRKKLAEQRPRIKGQFVRRIVSEGKEEKDKQSDNLVPGDNSIDIPQ* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0604 789 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Gso12g0604 789 MobiDBLite consensus disorder prediction 765 789 - -
Gso12g0604 789 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 755 IPR045279 GO:0009736
Gso12g0604 789 CDD psREC_PRR 92 195 - -
Gso12g0604 789 SMART REC_2 90 205 IPR001789 GO:0000160
Gso12g0604 789 MobiDBLite consensus disorder prediction 410 434 - -
Gso12g0604 789 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Gso12g0604 789 MobiDBLite consensus disorder prediction 231 270 - -
Gso12g0604 789 SUPERFAMILY CheY-like 89 216 IPR011006 -
Gso12g0604 789 ProSiteProfiles CCT domain profile. 720 762 IPR010402 GO:0005515
Gso12g0604 789 Gene3D - 89 249 - -
Gso12g0604 789 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 32 755 - -
Gso12g0604 789 MobiDBLite consensus disorder prediction 489 557 - -
Gso12g0604 789 MobiDBLite consensus disorder prediction 489 545 - -
Gso12g0604 789 Pfam CCT motif 720 761 IPR010402 GO:0005515
Gso12g0604 789 MobiDBLite consensus disorder prediction 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0604 Gso-Chr12 5541416 5556176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0604 37 305 Response Regulator Gene Family AT5G60100 60.573 4.37e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso12g0604 Response_reg 6.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0604 K12129 - gmx:100803462 1253.04