Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0603 ATGGAAAACAATGCTGAATCTGAGAATCCAAAAGGGAAAGGGAAAGGGATTCCAATTCACGGAGGCAAGTACGTTCGCTACAACATCTTAGGCAACCATTTCCAAGTCTATTCCAAGTACGCTCCCCCTCTCCAACCCGTTGGTCGCGGCGCATACGGCATCGTTTGCTGTGCGACGAATTCGGAGACGAAAGAAGGAGTGGCGATAAAGAAGATTGGGAATGCCTTTGACAACAGGATCGACGCCAAGAGGACGCTCAGGGAAATCAAGCTTCTCTGTCACATGGAACATGATAACATAATTAAAATTAAAGACATAATTCGGCCAGCGGAGAGGGAGAACTTCAATGACGTGTATATCGTGTACGAGTTGATGGACACCGATCTGCATCAGATTATACAGTCTAATCAGGCTCTCACCGATGAACATTGCCAGTACTTTTTATATCAACTCTTGCGAGGGTTGAAGTACATTCACTCTGCAAATGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTGAACGCAAACTGTGATCTCAAGATATGTGACTTTGGGCTTGCTAGAACAACCTCAGAGACCGACTTTATGACAGAATATGTTGTCACTCGTTGGTACAGAGCCCCTGAATTGCTACTGAATTGTTCAGAATATACTTCAGCTATTGATATTTGGTCGGTTGGTTGCATTTTGATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTCCAGCAGTTGGCCCTTATAACTGAGTTAATAGGTTCACCAAATGACTCGGATCTTGGATTCCTCAGAAGTGATAATGCAAAGAAGTATGTTAAGCAGCTCCCACATGTAGAAAAGCAGTCCTTTGCAGAGCGGTTTCCTGATGTGTCCCCATTAGCAATTGATCTTGCTGAGAAAATGTTGGTCTTTGATCCCTCCAAGCGCATAACTGTGGAGGAAGCACTGAATCACCCATACATGGCAAGTCTTCATGAGATCAACGAGGAGCCCACTTGCCCAACTCCTTTCATATTTGATTTCGAACAGACAATTCTCAACGAAGAAGATATAAAGGAGCTCATATGGAAGGAGTCTCTAAACTTCAGCCAGGATCATCAGATGTTGGAATAG 1131 0.4341 MENNAESENPKGKGKGIPIHGGKYVRYNILGNHFQVYSKYAPPLQPVGRGAYGIVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIIRPAERENFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELIGSPNDSDLGFLRSDNAKKYVKQLPHVEKQSFAERFPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYMASLHEINEEPTCPTPFIFDFEQTILNEEDIKELIWKESLNFSQDHQMLE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0603 376 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Gso12g0603 376 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0603 376 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Gso12g0603 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Gso12g0603 376 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gso12g0603 376 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0603 376 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Gso12g0603 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 372 - -
Gso12g0603 376 CDD STKc_TEY_MAPK 34 369 - -
Gso12g0603 376 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0603 376 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Gso12g0603 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 18 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0603 Gso-Chr12 5531629 5535619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0603 11 368 MAP Kinase Gene Family AT1G07880 79.888 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gso12g0603 Pkinase 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0603 K04371 - gmx:100802929 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0603 12 5531629 5535619 Gso11g1240 11 11317345 11321540 GST