Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0602 ATGTTAGATCTTAATCTCAATGCGGAATGGACCGATTCGTTTAGTAACGGTGACTCGCCGTTACCGTCACAGAAGTTTCCAGAGGGTTCGAGGAACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCCAGTAACGGCGGCGGCGACGAGGACTCGTGCTCCACGCGCGCTGACGATGTGTACACCACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCGTAACGAAGGAGCTCTTCCCGGTGATGAGTGAAGGAGCTAAAGGACACGCTACGTCGTCATTTTCAGCGAGGAATGGTTTTGTGGATCTCTCGTTCGATCGCGAAGGAGGGGACAGTGAGATGAAGATGCTTCAGCCTCAGACTCAGACTCAGACTCAGCAACCAGCGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACTTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCCAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTAACACTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACTTATGAAGGAGAAATGAAATCTGCAGCCATTAATGAAGGTGGCGGTCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTGGTCCCAAGGAAAATTGGGGGCAACTTCACTTCCCCTCCATCCCTTACAACACACATGGTGGAAGAAGTTCAAAGATGGAAACCAATGTTAATTCTGGAATTGGTAATCCATCTTTGAAAAGGATGGTTGTAACTGAAGATCGTCCTTCATTATGGAATGGCATGTCTCCTAATTTCTTTCCCAATGGGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAATTGGGCGTGGCAAACACATGGCCAGGTCAATGCTACCCCAGTACCATCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTGCCATCTTTCCAACAAGTTCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCTCGCCTACCCGCAATGTATCTGAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACCATAG 1422 0.481 MLDLNLNAEWTDSFSNGDSPLPSQKFPEGSRNQMAESGTSNSSVVNADGSSNGGGDEDSCSTRADDVYTTFNFDILKVEGANDVVTKELFPVMSEGAKGHATSSFSARNGFVDLSFDREGGDSEMKMLQPQTQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGGQNLDLNLGIATPGPGPKENWGQLHFPSIPYNTHGGRSSKMETNVNSGIGNPSLKRMVVTEDRPSLWNGMSPNFFPNGERAERIGIDPSKGLPNWAWQTHGQVNATPVPSFSAAASSGFSISATFPSTAIFPTSSMNSIPQSLCFTSSSSPTRNVSEYYYQVKPPQAPP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0602 473 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 MobiDBLite consensus disorder prediction 8 61 - -
Gso12g0602 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 441 - -
Gso12g0602 473 CDD AP2 153 211 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 SMART rav1_2 245 293 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Gso12g0602 473 Gene3D AP2/ERF domain 244 288 IPR036955 GO:0003700|GO:0006355
Gso12g0602 473 SUPERFAMILY DNA-binding domain 244 288 IPR016177 GO:0003677
Gso12g0602 473 CDD AP2 244 289 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Gso12g0602 473 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Gso12g0602 473 MobiDBLite consensus disorder prediction 127 154 - -
Gso12g0602 473 MobiDBLite consensus disorder prediction 127 142 - -
Gso12g0602 473 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 441 - -
Gso12g0602 473 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0602 Gso-Chr12 5461644 5466026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0602 1 473 AP2-EREBP Transcription Factor Family AT5G60120 44.773 1.36e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g0602 AP2 6.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0602 K09284 - gmx:100788303 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0602 12 5461644 5466026 Gso11g1241 11 11378917 11383276 GST
Gso15g0384 15 3518645 3523350 Gso12g0602 12 5461644 5466026 PCT
Gso11g3417 11 50087431 50091888 Gso12g0602 12 5461644 5466026 PCT
Gso12g0602 12 5461644 5466026 Gso15g0384 15 3518645 3523350 PCT
Gso12g0602 12 5461644 5466026 Gso11g3417 11 50087431 50091888 PCT