Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0599 ATGGCCGGAGTTAATCCAAACGGCGTCGCCGATTTTGCGGCGGTTCCGACGCATGGCGGACAGTTCATTCAGTACAACATATTTGGAAACCTCTTCGAGGTTACGACGAAGTACCGTCCTCCGATCATGCCTATCGGACGCGGCGCGTACGGAATCGTTTGCTCACTGTTGAATACCGAGACGAACGAGCTGGTGGCTGTGAAGAAGATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTTCGTGAGATTAAGCTTCTTAGGCATTTGGATCATGAAAATGTAATTGGTTTGAGAGATGTTATTCCTCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAGCCACTGAACTCATGGATACTGATCTTCACCATATCATTCGCTCCAATCAAAATCTGTCAGAGGAGCACTGCCAATACTTCTTGTACCAGATTCTTCGTGGGCTTAAGTATATACATTCTGCAAACGTAATCCATAGAGATTTAAAACCAAGCAACCTGCTGCTAAACTCAAACTGTGATTTAAAGATTATTGATTTTGGTCTTGCGAGACCGACTTTGGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTATAGAGCTCCCGAATTGTTGTTGAACTCCTCTGATTACACCTCTGCTATAGATGTGTGGTCTGTTGGTTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATGCAAGAAGATATATCAGACAACTTCCTCAATATCCTCGCCAACCTTTAGCTCAAGTCTTCCCCCATGTTCATCCCGCAGCCATTGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCAATTGGATGAAGAGCAAATAAAAGAGATGATCTACAGGGAAGCATTAGCACTGAATCCTGAGTATGCTTAA 1116 0.4382 MAGVNPNGVADFAAVPTHGGQFIQYNIFGNLFEVTTKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHHIIRSNQNLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNSNCDLKIIDFGLARPTLESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTEADLGLVKNEDARRYIRQLPQYPRQPLAQVFPHVHPAAIDLVDKMLTVDPTKRITVEEALAHPYLEKLHDVADEPICMEPFSFDFEQQQLDEEQIKEMIYREALALNPEYA* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0599 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gso12g0599 371 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Gso12g0599 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 370 - -
Gso12g0599 371 Pfam Protein kinase domain 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0599 371 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0599 371 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0599 371 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Gso12g0599 371 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Gso12g0599 371 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Gso12g0599 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 370 - -
Gso12g0599 371 CDD STKc_TEY_MAPK 32 368 - -
Gso12g0599 371 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0599 Gso-Chr12 5424248 5427291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0599 10 371 MAP Kinase Gene Family AT3G45640 83.702 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gso12g0599 Pkinase 3.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0599 K20536 - gmx:100801339 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0599 12 5424248 5427291 Gso11g1244 11 11446279 11449285 GST