Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0597 ATGGATCGGTTCTTTGGAAACTTGCCGCCAATGGATCTGATGCGCTCCGAGACGATGACCTTCGTCCAGCTCATCATCCCCGCCGAGTCCGCGCACCGCGCCATCAACTATTTAGGCGAACTCGGCCTCCTTCAATTCCGCGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCAGTCTTGCAAACAGATATTTATCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTCCTGGAGTTCAAGATTGTATTACAAAAGGCATGTCGTTTTCTTGTTTCAAGTCATGGCAATGCTTTTTCAGAAGAGAGAGAACTGGAGGAGAATGTTTTCTCAAATGGAGACTATATTGAGACACCATTTTTGTTTGAGCAGGAAATGAGGCATGCACCATCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCCACAAGAGGCAATATGCTTTTCAATCATGCACTAGCCGATGAACAAATCATGGATCCTATTTCAACTGAGATGGTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACCAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATAAGTAAACAGAGGCAAATAACTTCGGAGGTTTCATCCCGTCTTGCTGACTTAGAGGCAACTCTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTAGCTTCTGTAGGAGGCCATTTAACAAAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTGTATGATACACTGAACATGCTAAATTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCACTGCAGCGTGCAACTTTTGACAGTAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAATAGTTTCACAAGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACCACTATTATATTCCCATTTCTTTTCGCGGTTATGTTTGGTGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCGTTGGTTCTTATAGCACGTCAAAGCAAGCTCAGCACTCAGCGACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGTTATGTGCTACTTTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTCTCAGTTCCTTATCACATATTTGGTCCATCTGCTTATAAATGCCGAGATAACTCATGCAGGGATGCACATACTATTGGCTTAGTAAAATACCGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGTCGTTCAGAGTTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGCTGGGTGTGGTGCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAATTCGCTGGATATAAGGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATCGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTATTCTGGGGCCAAAGACCACTTCAAGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTATGGTGTGCTTAATAACTCTGAGGTTGATCTTGAGTTGGAACCAGATTCTGCCAGGCAACATCATGAGGAATTCAATTTCAGTGAGGTTTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTAGTGGGGCTAGCTGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGACTCTCAGCGCTTTTCTTCACGCCTTGCGTCTTCACTGGGTAGAATTTCAGAATAAATTCTACAGCGGTGATGGCTACAAGTTCAAACCTTTTTCCTTTGCCTCCTTAACAGAGGATGAAAATTGA 2457 0.4111 MDRFFGNLPPMDLMRSETMTFVQLIIPAESAHRAINYLGELGLLQFRDLNAEKSPFQRIFVNQVKRCAEMSRKLRFFEDQINKAGLMSSPSVLQTDIYLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLQKACRFLVSSHGNAFSEERELEENVFSNGDYIETPFLFEQEMRHAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNHALADEQIMDPISTEMVEKIVFVVFFSGEQARTKILKICDAFGANCYPVPEDISKQRQITSEVSSRLADLEATLDAGIRHRNKALASVGGHLTKWMDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHSMDALESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIARQSKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGPSAYKCRDNSCRDAHTIGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVVHMNLGILLSYFNARFFGNSLDIRYQFVPQMIFLNCLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFWGQRPLQVVLLLLAVIAVPWMLFPKPFILKKLHNERFQGRTYGVLNNSEVDLELEPDSARQHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYSGDGYKFKPFSFASLTEDEN* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0597 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gso12g0597 818 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gso12g0597 818 Coils Coil 99 126 - -
Gso12g0597 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Gso12g0597 818 PANTHER VACUOLAR PROTON ATPASE A1 5 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0597 Gso-Chr12 5399907 5412990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0597 1 811 Primary Pumps ATPases(2) AT2G28520 80.000 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0597 K02154 - gmx:100800799 1638.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0597 12 5399907 5412990 Gso11g1246 11 11464325 11475299 GST
Gso15g0387 15 3553200 3564050 Gso12g0597 12 5399907 5412990 PCT
Gso11g3413 11 50032055 50045869 Gso12g0597 12 5399907 5412990 PCT
Gso12g0597 12 5399907 5412990 Gso15g0387 15 3553200 3564050 PCT
Gso12g0597 12 5399907 5412990 Gso11g3413 11 50032055 50045869 PCT