Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0593 ATGCCCACTCCGTCCGGCTCAGAAGCTGCCATTGGTACTCGCCACACGCCACCATGGAGCCAGAAAACACATGGTATGGGAGCTGCTCGCAAGTTGAATTCCCACCGAAGAAGGCAGAGGAAGGCTGACAAATCATACAAGAAATCACATCTTGGAAATGAATGGAAAAAGCCATTTGCTGGATCTGGGATTGAGACTAAGCAACCAAACTCTGCCATTAGAAAATGTGCTCGAGTACAATTAATAAAAAATGGAAAGAAGATTGCAGCTTTTGTGCCAAATGATGGTTGCTTGAACTATATTGAAGAAAATGATGAAATGCTTATTGCTGGTTTTGGGCGAAAAGGGCATGCAGTTGGAGATATTCCTGGAGTCCGATTTAAGGTTGTGAAGGTATCTGGGGTGTCTCTTCTCGCCCTCTTCAAAGAGAAGAAGGAGAAGCCTAGGTCTTGA 453 0.4481 MPTPSGSEAAIGTRHTPPWSQKTHGMGAARKLNSHRRRQRKADKSYKKSHLGNEWKKPFAGSGIETKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEMLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0593 150 PANTHER 40S RIBOSOMAL PROTEIN S23 22 150 - -
Gso12g0593 150 MobiDBLite consensus disorder prediction 1 67 - -
Gso12g0593 150 Gene3D - 43 150 IPR012340 -
Gso12g0593 150 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 22 150 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gso12g0593 150 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0593 150 SUPERFAMILY Nucleic acid-binding proteins 41 148 IPR012340 -
Gso12g0593 150 Pfam Ribosomal protein S12/S23 62 149 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gso12g0593 150 MobiDBLite consensus disorder prediction 29 45 - -
Gso12g0593 150 CDD Ribosomal_S23 45 147 IPR005680 GO:0003735|GO:0006412|GO:0015935
Gso12g0593 150 ProSitePatterns Ribosomal protein S12 signature. 67 74 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0593 Gso-Chr12 5363476 5365072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0593 22 150 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 84.286 7.19e-79 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0593 K02973 - gmx:100787234 298.901