Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0590 ATGGAAAACAGTGACATTTCCTCTGCCCCACTTTCTCACTCCCCCACTAATTCCTCTTCTTCCTCACCAACACCACCTTCACCTCCTACTGTTGTGATGAGTCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTTCCTCCAACTGAACCTGCCAAGTTTACCATTGCACACCGGGTATTTGGTGCCAGCAACATCATCAAGTTCCTTCAGGAGCTTCCAGAGTCTCAGAGAGCTGATGCAGTGACCAGCATGGTGTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAGCAGATCAATGAACTTCAAGCACAATTGGGCAAGGCACAAGCTGAGCTTGTGAACATGCAGCTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGAAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTGGATGATTTCATTTCAACTCCTCCCCACAGTGGTGGTGCCTATCAAAGTGGCATGAACTTCTTTGAGGACAACACTAGCCTAAACTCACTATGGGAACAGCCCCTTTGGACATGA 609 0.4713 MENSDISSAPLSHSPTNSSSSSPTPPSPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQINELQAQLGKAQAELVNMQLQQANLVALICMKMAQSPQESPQQSVDDFISTPPHSGGAYQSGMNFFEDNTSLNSLWEQPLWT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0590 202 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Gso12g0590 202 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0590 202 MobiDBLite consensus disorder prediction 1 31 - -
Gso12g0590 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 198 - -
Gso12g0590 202 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Gso12g0590 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 198 - -
Gso12g0590 202 Coils Coil 114 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0590 Gso-Chr12 5329296 5331423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0590 31 202 AS2 family AT1G07900 66.092 6.77e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso12g0590 LOB 3.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0590 - - gmx:100797804 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0590 12 5329296 5331423 Gso11g1251 11 11546450 11548954 GST
Gso15g0391 15 3611803 3613851 Gso12g0590 12 5329296 5331423 PCT
Gso11g3401 11 49915655 49917860 Gso12g0590 12 5329296 5331423 PCT
Gso12g0590 12 5329296 5331423 Gso15g0391 15 3611803 3613851 PCT
Gso12g0590 12 5329296 5331423 Gso11g3401 11 49915655 49917860 PCT